Variant report

Variant	rs143811003
Chromosome Location	chr11:36617354-36617355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr11:36617341-36617398	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Variant related genes	Relation type
RAG2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36614200-36619600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:36616600-36621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
4	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
5	chr11:36616800-36617400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:36616800-36617400	Enhancers	Fetal Intestine Small	intestine
7	chr11:36616800-36621800	Active TSS	Fetal Thymus	thymus
8	chr11:36616800-36639600	Weak transcription	Aorta	Aorta
9	chr11:36617000-36617400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:36617000-36617400	Enhancers	Osteobl	bone
11	chr11:36617000-36617600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr11:36617000-36618000	Enhancers	Primary T cells from cord blood	blood
13	chr11:36617000-36618200	Enhancers	Adipose Nuclei	Adipose
14	chr11:36617000-36618200	Enhancers	Fetal Heart	heart
15	chr11:36617000-36622200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:36617200-36617400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36617200-36617400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:36617200-36617400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:36617200-36617400	Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr11:36617200-36617400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
21	chr11:36617200-36617400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:36617200-36617400	Enhancers	Liver	Liver
23	chr11:36617200-36617400	Enhancers	Brain Anterior Caudate	brain
24	chr11:36617200-36617400	Enhancers	Brain Hippocampus Middle	brain
25	chr11:36617200-36617400	Enhancers	Brain Substantia Nigra	brain
26	chr11:36617200-36617400	Enhancers	Fetal Kidney	kidney
27	chr11:36617200-36617400	Enhancers	Fetal Lung	lung
28	chr11:36617200-36617400	Enhancers	Right Ventricle	heart
29	chr11:36617200-36617400	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:36617200-36617600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:36617200-36617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:36617200-36617600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:36617200-36617800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:36617200-36617800	Enhancers	Fetal Brain Female	brain
35	chr11:36617200-36618000	Weak transcription	Psoas Muscle	Psoas
36	chr11:36617200-36618200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:36617200-36618400	Enhancers	Colon Smooth Muscle	Colon
38	chr11:36617200-36621800	Active TSS	Thymus	Thymus
39	chr11:36617200-36622000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:36617200-36626800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:36617200-36630000	Weak transcription	HSMMtube	muscle
42	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links