Variant report

Variant	rs143852795
Chromosome Location	chr4:100553936-100553937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3328229	chr4:100553540-100553988	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100538200-100556000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:100546000-100561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:100551400-100555200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:100551600-100554000	Weak transcription	HMEC	breast
5	chr4:100551800-100554400	Weak transcription	NHEK	skin
6	chr4:100552800-100557200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:100553400-100554200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:100553400-100554200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:100553600-100563400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:100553600-100564200	Weak transcription	Left Ventricle	heart
11	chr4:100553600-100564600	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links