Variant report

Variant	rs143940835
Chromosome Location	chr11:35009499-35009500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv897215	chr11:35009233-35048359	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
2	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:34976600-35018400	Weak transcription	Spleen	Spleen
4	chr11:34977800-35009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:34982200-35014200	Weak transcription	Fetal Brain Male	brain
6	chr11:34983600-35018200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:34985200-35026600	Weak transcription	Colonic Mucosa	Colon
8	chr11:34987000-35017000	Weak transcription	K562	blood
9	chr11:34991000-35020800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:34992400-35016600	Weak transcription	Fetal Heart	heart
11	chr11:34997600-35019600	Weak transcription	Fetal Kidney	kidney
12	chr11:34999000-35018600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:35000600-35035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:35000800-35009800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:35000800-35010600	Weak transcription	Primary T cells from cord blood	blood
16	chr11:35000800-35013200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:35000800-35018200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:35000800-35019600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:35000800-35019800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:35000800-35031000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:35001000-35014400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:35001000-35019600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:35001000-35019600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:35001000-35019600	Weak transcription	HMEC	breast
25	chr11:35001000-35021200	Weak transcription	Lung	lung
26	chr11:35001200-35019600	Weak transcription	NHEK	skin
27	chr11:35002400-35010200	Weak transcription	Hela-S3	cervix
28	chr11:35005600-35009600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:35005600-35011200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:35005600-35011200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:35005800-35011600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:35006400-35011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:35006400-35016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:35006800-35009800	Weak transcription	HSMMtube	muscle
35	chr11:35006800-35019600	Weak transcription	HUVEC	blood vessel
36	chr11:35007000-35018600	Weak transcription	Thymus	Thymus
37	chr11:35007000-35019600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:35007000-35020600	Weak transcription	Placenta	Placenta
39	chr11:35007000-35026600	Weak transcription	Fetal Intestine Small	intestine
40	chr11:35007000-35028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:35007000-35029800	Weak transcription	Esophagus	oesophagus
42	chr11:35007200-35011000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:35007200-35017600	Weak transcription	Brain Anterior Caudate	brain
44	chr11:35007200-35018200	Weak transcription	Brain Angular Gyrus	brain
45	chr11:35007200-35035200	Weak transcription	Fetal Stomach	stomach
46	chr11:35007400-35010000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:35007400-35010600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:35007400-35012600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:35007400-35014400	Weak transcription	Colon Smooth Muscle	Colon
50	chr11:35007400-35014800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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