Variant report

Variant	rs143941557
Chromosome Location	chr7:21502405-21502406
allele	-/AGAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv524775	chr7:21501984-21504427	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21470400-21516600	Weak transcription	Liver	Liver
2	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
3	chr7:21472800-21506000	Weak transcription	Right Ventricle	heart
4	chr7:21474800-21520600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:21487400-21557000	Weak transcription	Aorta	Aorta
6	chr7:21491000-21526800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:21491000-21536400	Weak transcription	Left Ventricle	heart
8	chr7:21491400-21503000	Weak transcription	Gastric	stomach
9	chr7:21492200-21545200	Weak transcription	Small Intestine	intestine
10	chr7:21493000-21539000	Weak transcription	Spleen	Spleen
11	chr7:21493800-21529600	Weak transcription	Brain Anterior Caudate	brain
12	chr7:21494000-21504600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:21494400-21505600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:21494400-21517400	Weak transcription	Fetal Kidney	kidney
15	chr7:21495200-21521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:21495800-21516800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:21496000-21502800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:21496000-21516600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:21496000-21519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:21496200-21505400	Weak transcription	Ovary	ovary
21	chr7:21496200-21517800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:21496600-21503000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:21496600-21517600	Weak transcription	Dnd41	blood
24	chr7:21496600-21521600	Weak transcription	Adipose Nuclei	Adipose
25	chr7:21496800-21517600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:21497200-21516200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:21497600-21520800	Weak transcription	HUVEC	blood vessel
28	chr7:21497800-21502800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:21498000-21518800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:21498200-21503800	Weak transcription	Lung	lung
31	chr7:21498200-21532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:21498600-21543600	Weak transcription	Pancreas	Pancrea
33	chr7:21498800-21511800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:21498800-21517200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:21499200-21507200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:21499600-21516600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:21500000-21502600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr7:21500000-21503000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:21500000-21505200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr7:21500000-21512600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:21500000-21530400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:21500000-21552800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:21500200-21502600	Weak transcription	Primary T cells from cord blood	blood
44	chr7:21500200-21516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:21500200-21520600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:21500200-21520800	Weak transcription	GM12878-XiMat	blood
47	chr7:21500400-21517400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:21500400-21529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:21500600-21502800	Weak transcription	Primary B cells from cord blood	blood
50	chr7:21500600-21516400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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