Variant report

Variant	rs1439745
Chromosome Location	chr2:210025481-210025482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10169782	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10179373	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10198749	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10932286	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10932290	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1158556	0.85[ASN][1000 genomes]
rs12053454	0.88[ASN][1000 genomes]
rs12467304	0.83[ASN][1000 genomes]
rs12472582	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439729	0.85[ASN][1000 genomes]
rs1439740	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439747	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446612	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1837432	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1900311	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1900312	0.84[ASN][1000 genomes]
rs1900324	0.85[ASN][1000 genomes]
rs2119037	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2119040	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2165169	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2886335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4640323	0.80[ASN][1000 genomes]
rs4673452	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4673453	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6721786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753340	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561765	0.88[ASN][1000 genomes]
rs7563203	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7570897	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7572758	0.88[ASN][1000 genomes]
rs7593854	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607391	0.82[ASN][1000 genomes]
rs966426	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs990298	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv875762	chr2:209992353-210036655	Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1010749	chr2:209999344-210026471	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv875763	chr2:210000582-210036655	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210023000-210025600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:210024400-210028200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:210025400-210025600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:210025400-210025800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell

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