The 2.0 version of rSNPBase

Variant report

Variant rs143979542
Chromosome Location chr4:54331777-54331778
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
2 chr4:54316800-54332600 Weak transcription Esophagus oesophagus
3 chr4:54317400-54332600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr4:54320000-54332600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr4:54320000-54332600 Weak transcription Aorta Aorta
6 chr4:54320000-54332800 Weak transcription Fetal Stomach stomach
7 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
8 chr4:54320000-54353200 Weak transcription Gastric stomach
9 chr4:54321000-54332600 Weak transcription H9 Cell Line embryonic stem cell
10 chr4:54321200-54331800 Weak transcription Ovary ovary
11 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
13 chr4:54326400-54332200 Weak transcription Fetal Intestine Small intestine
14 chr4:54326400-54332600 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
16 chr4:54327800-54334600 Weak transcription NHLF lung
17 chr4:54327800-54335200 Weak transcription HMEC breast
18 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr4:54328000-54332000 Weak transcription HUVEC blood vessel
21 chr4:54328000-54332400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr4:54328000-54332600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr4:54328000-54332800 Weak transcription A549 lung
24 chr4:54328000-54339400 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr4:54328200-54332400 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr4:54328200-54362000 Weak transcription Brain Inferior Temporal Lobe brain
27 chr4:54328400-54333600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr4:54328400-54362000 Weak transcription Brain Angular Gyrus brain
29 chr4:54328600-54331800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr4:54328600-54332600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr4:54328600-54332600 Weak transcription Fetal Muscle Leg muscle
32 chr4:54328600-54339600 Weak transcription Fetal Brain Female brain
33 chr4:54329200-54332200 Weak transcription Primary monocytes fromperipheralblood blood
34 chr4:54329200-54332400 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr4:54329200-54332400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr4:54329200-54332400 Weak transcription Duodenum Mucosa Duodenum
37 chr4:54329200-54332600 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr4:54329400-54332400 Weak transcription Primary B cells from peripheral blood blood
39 chr4:54329400-54332800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr4:54329600-54332000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr4:54329600-54332200 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr4:54329600-54332200 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr4:54329600-54332400 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr4:54329600-54332400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr4:54329600-54332400 Weak transcription Dnd41 blood
46 chr4:54329600-54339000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr4:54329600-54341600 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr4:54329600-54341800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr4:54329600-54342000 Weak transcription NH-A brain
50 chr4:54329600-54351000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015