Variant report

Variant	rs1439813
Chromosome Location	chr2:190442842-190442843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190430886..190434055-chr2:190440352..190443388,4	K562	blood:
2	chr2:190415379..190418461-chr2:190441095..190444041,3	K562	blood:
3	chr2:190341340..190343913-chr2:190441363..190443168,2	K562	blood:
4	chr2:190441665..190443779-chr6:27103108..27105196,2	K562	blood:
5	chr2:190330753..190332897-chr2:190440426..190442932,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1123110	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13015236	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1439814	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439815	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4287798	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7604547	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190424800-190444400	Weak transcription	Brain Substantia Nigra	brain
2	chr2:190426600-190444200	Weak transcription	Brain Angular Gyrus	brain
3	chr2:190428400-190443800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:190429000-190444400	Weak transcription	Thymus	Thymus
5	chr2:190430200-190443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:190430400-190444600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:190431200-190444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:190432000-190444600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:190434200-190444800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:190434400-190444400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:190435800-190443000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:190435800-190444400	Weak transcription	NHLF	lung
13	chr2:190436000-190444800	Weak transcription	HSMM	muscle
14	chr2:190438600-190444200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:190438800-190443000	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:190438800-190444400	Weak transcription	Fetal Thymus	thymus
17	chr2:190439200-190444400	Flanking Active TSS	Liver	Liver
18	chr2:190439600-190443400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:190439600-190443400	Enhancers	Stomach Mucosa	stomach
20	chr2:190439600-190444600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:190439600-190444600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:190440000-190443000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:190440000-190443400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:190440000-190444400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr2:190440000-190444400	Weak transcription	Lung	lung
26	chr2:190440000-190445200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr2:190440200-190444200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr2:190440200-190444600	Weak transcription	HSMMtube	muscle
29	chr2:190440200-190445000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:190440600-190444400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:190440600-190444400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:190441000-190443000	Weak transcription	Primary T cells from cord blood	blood
33	chr2:190441000-190444600	Weak transcription	HUVEC	blood vessel
34	chr2:190441200-190443000	Genic enhancers	Fetal Muscle Leg	muscle
35	chr2:190441200-190443200	Enhancers	Pancreas	Pancrea
36	chr2:190441200-190443200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
37	chr2:190441200-190443600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr2:190441200-190443600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
39	chr2:190441400-190444600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:190441400-190444600	Transcr. at gene 5' and 3'	Dnd41	blood
41	chr2:190441600-190443200	Genic enhancers	K562	blood
42	chr2:190441600-190443400	Enhancers	Right Ventricle	heart
43	chr2:190441600-190443600	Transcr. at gene 5' and 3'	Fetal Lung	lung
44	chr2:190441600-190446400	Active TSS	Rectal Smooth Muscle	rectum
45	chr2:190441800-190443000	Genic enhancers	Fetal Stomach	stomach
46	chr2:190441800-190443400	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
47	chr2:190441800-190443600	Transcr. at gene 5' and 3'	Ovary	ovary
48	chr2:190441800-190443800	Transcr. at gene 5' and 3'	Placenta	Placenta
49	chr2:190441800-190444000	Enhancers	Fetal Heart	heart
50	chr2:190441800-190444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links