Variant report

Variant	rs143999846
Chromosome Location	chr7:64280477-64280478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64279288..64281890-chr7:64330728..64333197,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
9	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
12	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
16	esv3399018	chr7:64279985-64283189	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3477300	chr7:64280006-64283192	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3477301	chr7:64280006-64283192	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3409838	chr7:64280050-64283189	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64255800-64293200	Weak transcription	NH-A	brain
2	chr7:64255800-64293400	Weak transcription	Psoas Muscle	Psoas
3	chr7:64256000-64285200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:64256000-64294400	Weak transcription	Fetal Kidney	kidney
5	chr7:64256800-64283800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:64256800-64283800	Weak transcription	Pancreas	Pancrea
7	chr7:64256800-64286200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:64256800-64292200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:64257400-64283600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:64260600-64286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:64260600-64288800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:64260600-64292400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:64260800-64284000	Weak transcription	Left Ventricle	heart
14	chr7:64260800-64284400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:64260800-64286400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:64260800-64288600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:64260800-64291400	Weak transcription	Liver	Liver
18	chr7:64261000-64295400	Weak transcription	Osteobl	bone
19	chr7:64262800-64291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:64263400-64284000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:64265400-64286400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:64268600-64286200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:64268600-64296000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:64268800-64292200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:64268800-64293400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:64269000-64286200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:64272400-64291200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:64272400-64292800	Weak transcription	Brain Anterior Caudate	brain
29	chr7:64272600-64286200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:64272600-64291200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:64272800-64283800	Weak transcription	Fetal Intestine Large	intestine
32	chr7:64272800-64284400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:64272800-64284400	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:64272800-64291800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:64272800-64295200	Weak transcription	Fetal Thymus	thymus
36	chr7:64273000-64283600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:64273000-64283800	Weak transcription	Fetal Lung	lung
38	chr7:64273000-64283800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:64273000-64284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:64273000-64291200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:64273000-64292800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:64273200-64283200	Weak transcription	Brain Germinal Matrix	brain
43	chr7:64273200-64284000	Weak transcription	HSMMtube	muscle
44	chr7:64273200-64284400	Weak transcription	Fetal Muscle Leg	muscle
45	chr7:64273200-64290600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr7:64273400-64301400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:64273600-64280800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:64273600-64283800	Weak transcription	Adipose Nuclei	Adipose
49	chr7:64273600-64291400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:64273600-64292200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links