Variant report

Variant	rs144006010
Chromosome Location	chr11:106887620-106887621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106885964..106887864-chr11:106888174..106890518,2	MCF-7	breast:
2	chr11:106880999..106883470-chr11:106886135..106887941,2	K562	blood:

Variant related genes	Relation type
ENSG00000152402	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3378270	chr11:106887267-106890115	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3390031	chr11:106887567-106891165	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106885400-106887800	Enhancers	Fetal Heart	heart
2	chr11:106885600-106887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain
4	chr11:106886200-106888000	Weak transcription	NH-A	brain
5	chr11:106886400-106888200	Active TSS	Psoas Muscle	Psoas
6	chr11:106886400-106889400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
7	chr11:106886400-106889600	Bivalent/Poised TSS	Left Ventricle	heart
8	chr11:106886400-106890000	Active TSS	Brain Hippocampus Middle	brain
9	chr11:106886400-106890000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr11:106886400-106890000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:106886800-106888000	Active TSS	Fetal Muscle Leg	muscle
12	chr11:106886800-106888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:106886800-106888400	Flanking Active TSS	Fetal Lung	lung
14	chr11:106886800-106888400	Active TSS	Right Ventricle	heart
15	chr11:106886800-106889000	Active TSS	Fetal Muscle Trunk	muscle
16	chr11:106886800-106890000	Active TSS	Brain Angular Gyrus	brain
17	chr11:106887000-106887800	Active TSS	Brain Cingulate Gyrus	brain
18	chr11:106887000-106888400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
19	chr11:106887200-106887800	Weak transcription	Ovary	ovary
20	chr11:106887200-106888000	Active TSS	Placenta	Placenta
21	chr11:106887200-106888200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
22	chr11:106887200-106889200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
23	chr11:106887400-106887800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
24	chr11:106887400-106887800	Flanking Active TSS	Fetal Brain Female	brain
25	chr11:106887400-106888000	Active TSS	Brain Germinal Matrix	brain
26	chr11:106887400-106888000	Active TSS	Fetal Brain Male	brain
27	chr11:106887400-106890400	Active TSS	Brain Substantia Nigra	brain
28	chr11:106887600-106887800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:106887600-106887800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr11:106887600-106888000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr11:106887600-106888200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:106887600-106889400	Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links