Variant report

Variant	rs144043561
Chromosome Location	chr10:95535433-95535434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:95535360-95535510	Caco-2	colon:	n/a	n/a
2	CTCF	chr10:95535340-95535490	A549	lung:	n/a	n/a
3	RAD21	chr10:95535200-95535607	MCF-7	breast:	n/a	n/a
4	SP1	chr10:95534985-95535447	A549	lung:	n/a	n/a
5	CTCF	chr10:95535254-95535464	MCF-7	breast:	n/a	n/a
6	GATA3	chr10:95535074-95535573	MCF-7	breast:	n/a	n/a
7	EP300	chr10:95534902-95535554	T-47D	breast:	n/a	n/a
8	TCF12	chr10:95535013-95535611	A549	lung:	n/a	n/a
9	CTCF	chr10:95535300-95535450	HAc	cerebellar:	n/a	n/a
10	CTCF	chr10:95534991-95536211	A549	lung:	n/a	n/a
11	FOXA2	chr10:95535109-95535509	A549	lung:	n/a	n/a
12	EP300	chr10:95535019-95535459	T-47D	breast:	n/a	n/a
13	ESR1	chr10:95534986-95535478	T-47D	breast:	n/a	n/a
14	ESR1	chr10:95535007-95535495	T-47D	breast:	n/a	n/a
15	CTCF	chr10:95535320-95535470	RPTEC	kidney:	n/a	n/a
16	FOXA1	chr10:95534935-95535448	T-47D	breast:	n/a	n/a
17	FOXA1	chr10:95535002-95535487	T-47D	breast:	n/a	n/a
18	GATA3	chr10:95535038-95535539	T-47D	breast:	n/a	n/a
19	CTCF	chr10:95535207-95535485	MCF-7	breast:	n/a	n/a
20	NR2F2	chr10:95535003-95535569	MCF-7	breast:	n/a	n/a
21	ESR1	chr10:95535032-95535438	T-47D	breast:	n/a	n/a
22	CTCF	chr10:95535340-95535490	HBMEC	blood vessel:	n/a	n/a
23	GATA3	chr10:95535044-95535554	T-47D	breast:	n/a	n/a
24	NR2F2	chr10:95534976-95535537	MCF-7	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:95535282..95535827-chr10:95575621..95576141,2	MCF-7	breast:
2	chr10:95527947..95530027-chr10:95533971..95535775,2	MCF-7	breast:
3	chr10:95522144..95525198-chr10:95532040..95536746,5	MCF-7	breast:

No data

Variant related genes	Relation type
LGI1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1840973	chr10:95534265-95552953	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
3	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:95530000-95536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:95530600-95536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:95533800-95536600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:95533800-95536800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:95534000-95535800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:95534000-95536400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:95534000-95538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:95535000-95535600	Enhancers	HepG2	liver
16	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:95535400-95535600	Flanking Active TSS	A549	lung
18	chr10:95535400-95535800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:95535400-95536000	Flanking Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links