Variant report

Variant	rs144055504
Chromosome Location	chr5:178389556-178389557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv525129	chr5:178385585-178390237	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3471133	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3471134	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv823356	chr5:178389435-178391094	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
6	chr5:178383400-178394400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:178384400-178395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:178386400-178389600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:178386400-178389800	Weak transcription	Right Ventricle	heart
10	chr5:178387000-178394200	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr5:178387200-178389600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:178387600-178389800	Weak transcription	Aorta	Aorta
13	chr5:178387800-178394400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:178388600-178389800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:178388600-178390600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:178388800-178389600	Weak transcription	Left Ventricle	heart
17	chr5:178388800-178389800	Strong transcription	Fetal Kidney	kidney
18	chr5:178388800-178389800	Weak transcription	Fetal Stomach	stomach
19	chr5:178388800-178393200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr5:178388800-178397000	ZNF genes & repeats	Brain Anterior Caudate	brain
21	chr5:178388800-178398600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr5:178389000-178393000	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr5:178389000-178394200	ZNF genes & repeats	Fetal Lung	lung
24	chr5:178389000-178394400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:178389000-178398200	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr5:178389200-178390400	Active TSS	Right Atrium	heart
27	chr5:178389200-178394000	ZNF genes & repeats	Ovary	ovary
28	chr5:178389200-178394400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
29	chr5:178389200-178394600	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr5:178389200-178398400	ZNF genes & repeats	Liver	Liver
31	chr5:178389400-178392600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:178389400-178400400	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr5:178389400-178405200	ZNF genes & repeats	Brain Germinal Matrix	brain

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