Variant report

Variant	rs1440960
Chromosome Location	chr5:93068149-93068150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11739080	1.00[MEX][hapmap]
rs222834	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:93057600-93070200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:93057800-93071000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:93059600-93071400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:93060800-93076200	Weak transcription	Left Ventricle	heart
10	chr5:93063800-93070800	Weak transcription	HUVEC	blood vessel
11	chr5:93065200-93075000	Weak transcription	Psoas Muscle	Psoas
12	chr5:93065200-93078400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:93066000-93087400	Weak transcription	Dnd41	blood
14	chr5:93066200-93071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:93066400-93076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:93066400-93083400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:93067000-93068200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:93067600-93072200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr5:93067800-93073400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr5:93068000-93071200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:93068000-93075200	Weak transcription	Fetal Lung	lung
22	chr5:93068000-93076200	Weak transcription	Fetal Intestine Small	intestine
23	chr5:93068000-93076400	Weak transcription	Pancreas	Pancrea

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