Variant report

Variant	rs144167234
Chromosome Location	chr1:154268198-154268199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr1:154268098-154268581	HCT-116	colon:	n/a	n/a
2	TEAD4	chr1:154268103-154268489	K562	blood:	n/a	n/a
3	MAZ	chr1:154268150-154268350	K562	blood:	n/a	n/a
4	MEF2A	chr1:154268052-154268443	K562	blood:	n/a	chr1:154268110-154268125 chr1:154268106-154268127 chr1:154268108-154268129 chr1:154268112-154268123 chr1:154268109-154268126 chr1:154268109-154268125 chr1:154268113-154268122
5	TCF12	chr1:154267944-154268520	A549	lung:	n/a	n/a
6	RCOR1	chr1:154268153-154268608	IMR90	lung:	n/a	n/a
7	YY1	chr1:154268139-154268441	HCT-116	colon:	n/a	n/a
8	YY1	chr1:154268139-154268406	SK-N-SH_RA	brain:	n/a	n/a
9	USF1	chr1:154268123-154268403	SK-N-SH	brain:	n/a	n/a
10	UBTF	chr1:154268191-154268469	K562	blood:	n/a	n/a
11	SETDB1	chr1:154267903-154268540	K562	blood:	n/a	n/a
12	SETDB1	chr1:154267795-154268550	U2OS	brain:	n/a	n/a
13	YY1	chr1:154268094-154268405	GM12892	blood:	n/a	n/a
14	EP300	chr1:154268150-154268432	K562	blood:	n/a	n/a
15	TBL1XR1	chr1:154268173-154268455	K562	blood:	n/a	n/a
16	USF1	chr1:154268103-154268491	A549	lung:	n/a	n/a
17	USF1	chr1:154268195-154268506	ECC-1	luminal epithelium:	n/a	n/a
18	KAP1	chr1:154267695-154268550	K562	blood:	n/a	n/a
19	YY1	chr1:154268158-154268377	H1-hESC	embryonic stem cell:	n/a	n/a
20	ZNF143	chr1:154268140-154268458	Hela-S3	cervix:	n/a	n/a
21	USF1	chr1:154268151-154268550	HCT-116	colon:	n/a	n/a
22	RCOR1	chr1:154268153-154268441	K562	blood:	n/a	n/a
23	CBX3	chr1:154267864-154268538	K562	blood:	n/a	n/a
24	YY1	chr1:154268137-154268451	GM12878	blood:	n/a	n/a
25	YY1	chr1:154268124-154268420	SK-N-SH_RA	brain:	n/a	n/a
26	TEAD4	chr1:154268086-154268471	K562	blood:	n/a	n/a
27	IRF1	chr1:154268157-154268458	K562	blood:	n/a	n/a
28	YY1	chr1:154268189-154268330	HCT-116	colon:	n/a	n/a
29	TRIM28	chr1:154267986-154268579	K562	blood:	n/a	n/a
30	TRIM28	chr1:154268086-154268476	K562	blood:	n/a	n/a
31	CBX3	chr1:154267818-154268547	K562	blood:	n/a	n/a
32	USF1	chr1:154268066-154268449	K562	blood:	n/a	n/a
33	EGR1	chr1:154268177-154268374	K562	blood:	n/a	n/a
34	EGR1	chr1:154268139-154268388	K562	blood:	n/a	n/a
35	KAP1	chr1:154267994-154268501	U2OS	brain:	n/a	n/a
36	MEF2A	chr1:154268119-154268416	K562	blood:	n/a	n/a
37	KAP1	chr1:154267921-154268535	HEK293	kidney:	n/a	n/a
38	ZNF143	chr1:154268117-154268468	GM12878	blood:	n/a	n/a
39	ZNF143	chr1:154268117-154268467	H1-hESC	embryonic stem cell:	n/a	n/a
40	ZNF143	chr1:154268095-154268482	K562	blood:	n/a	n/a
41	JUN	chr1:154268109-154268475	K562	blood:	n/a	n/a
42	USF1	chr1:154268084-154268403	A549	lung:	n/a	n/a
43	USF1	chr1:154268146-154268397	A549	lung:	n/a	n/a
44	ZNF384	chr1:154268125-154268445	K562	blood:	n/a	chr1:154268159-154268167
45	ZMIZ1	chr1:154268160-154268420	K562	blood:	n/a	n/a
46	CBX3	chr1:154268110-154268596	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
RNU6-121P	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	esv3451054	chr1:154182013-154360141	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	esv3438757	chr1:154267776-154270120	ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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