Variant report

Variant	rs1442199
Chromosome Location	chr3:19447211-19447212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10514672	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10514673	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348231	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1372548	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1372551	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs17005936	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs17005937	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs17005949	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17005954	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17005967	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17005972	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs17005976	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17005980	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17005983	1.00[CEU][hapmap]
rs17005985	1.00[CEU][hapmap]
rs17005998	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs17006003	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17006010	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17006048	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs4021207	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs57565118	1.00[EUR][1000 genomes]
rs57684768	0.86[EUR][1000 genomes]
rs58915529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60072470	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60546560	0.86[EUR][1000 genomes]
rs60942804	0.86[EUR][1000 genomes]
rs6776448	1.00[CEU][hapmap]
rs6796647	1.00[CEU][hapmap]
rs6800537	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6801951	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[MEX][hapmap]
rs7617994	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs951678	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs9841624	1.00[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517847	chr3:18845347-19483695	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv948636	chr3:19335802-19856585	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv589855	chr3:19409153-19512074	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19435200-19449000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:19436800-19448800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:19446600-19448200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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