Variant report

Variant	rs144228827
Chromosome Location	chr8:96216519-96216520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:96216428-96216764	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96214009..96217041-chr8:96227079..96229399,3	K562	blood:
2	chr8:96203588..96205355-chr8:96213750..96216635,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253773	TF binding region
ENSG00000253351	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv523655	chr8:96205920-96239113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16466	chr8:96206151-96243934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv516035	chr8:96208726-96235451	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv465740	chr8:96211820-96235451	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv611758	chr8:96211820-96235451	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96209000-96220000	Weak transcription	Right Ventricle	heart
2	chr8:96212000-96218000	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:96212400-96217000	Enhancers	Fetal Thymus	thymus
4	chr8:96214000-96217000	Enhancers	HepG2	liver
5	chr8:96214200-96220000	Weak transcription	HMEC	breast
6	chr8:96214200-96226400	Weak transcription	Right Atrium	heart
7	chr8:96214400-96233400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:96214600-96217200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:96215200-96220400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:96215400-96217000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:96215400-96219400	Weak transcription	Placenta	Placenta
12	chr8:96215600-96220000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:96215800-96220800	Weak transcription	Primary B cells from cord blood	blood
14	chr8:96215800-96220800	Weak transcription	Thymus	Thymus
15	chr8:96216000-96217400	Enhancers	K562	blood
16	chr8:96216200-96216600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:96216200-96217800	Enhancers	Pancreas	Pancrea
18	chr8:96216200-96220000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:96216400-96216600	Weak transcription	Esophagus	oesophagus
20	chr8:96216400-96216600	Enhancers	Gastric	stomach

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