Variant report

Variant	rs144277102
Chromosome Location	chr3:47490451-47490452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47490125..47492275-chr3:47492500..47495080,2	K562	blood:
2	chr3:47490214..47492275-chr3:47492500..47494353,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv511233	chr3:47484797-47494157	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv590212	chr3:47485029-47500662	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3461079	chr3:47488748-47495346	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv3806	chr3:47488784-47518133	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3489698	chr3:47489548-47494546	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3461077	chr3:47489973-47494321	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3489693	chr3:47489973-47494471	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3461071	chr3:47490066-47493756	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv436375	chr3:47490402-47494026	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv7925	chr3:47490432-47493711	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3461076	chr3:47490448-47493996	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47476600-47514200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:47481400-47496000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:47481400-47500600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:47481800-47492600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:47484000-47507800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:47484000-47511200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:47484200-47511200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:47484400-47492600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:47484400-47497200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:47484600-47494200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:47484600-47497400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:47484600-47500600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:47484600-47514000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:47484600-47514200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:47484600-47514200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:47484600-47514200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:47484600-47514800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:47484800-47504400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:47484800-47504600	Weak transcription	Primary T cells from cord blood	blood
20	chr3:47484800-47514800	Weak transcription	Thymus	Thymus
21	chr3:47485000-47514800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:47485200-47502600	Weak transcription	K562	blood
23	chr3:47485400-47490800	Weak transcription	Fetal Lung	lung
24	chr3:47485400-47493000	Weak transcription	Spleen	Spleen
25	chr3:47485400-47494200	Weak transcription	Ovary	ovary
26	chr3:47485400-47503200	Weak transcription	Gastric	stomach
27	chr3:47485600-47493200	Weak transcription	Esophagus	oesophagus
28	chr3:47485600-47494000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:47485800-47493600	Weak transcription	Fetal Heart	heart
30	chr3:47486000-47490800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:47486000-47492200	Weak transcription	Psoas Muscle	Psoas
32	chr3:47486000-47494200	Weak transcription	Left Ventricle	heart
33	chr3:47486000-47497200	Weak transcription	A549	lung
34	chr3:47486000-47497400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:47486000-47500200	Weak transcription	Fetal Intestine Large	intestine
36	chr3:47486000-47500400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:47486000-47504600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:47486000-47516000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:47486000-47516000	Weak transcription	Small Intestine	intestine
40	chr3:47486000-47516000	Weak transcription	HSMM	muscle
41	chr3:47486200-47497200	Weak transcription	Hela-S3	cervix
42	chr3:47486200-47502600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:47486200-47506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:47486200-47516000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:47486600-47494400	Weak transcription	HepG2	liver
46	chr3:47486600-47500600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:47487000-47502400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:47487400-47497600	Weak transcription	Liver	Liver
49	chr3:47489000-47494000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:47489200-47500400	Weak transcription	Fetal Intestine Small	intestine

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