Variant report

Variant	rs1442917
Chromosome Location	chr4:171604488-171604489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11929764	1.00[AMR][1000 genomes]
rs1442912	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59045030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845559	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171602600-171605400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:171603400-171604600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:171603400-171604600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:171604200-171604800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:171604400-171605400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:171604400-171605400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:171604400-171605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:171604400-171605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:171604400-171605600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:171604400-171605600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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