Variant report

Variant	rs1443045
Chromosome Location	chr11:24256689-24256690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11820070	0.83[EUR][1000 genomes]
rs11827950	1.00[EUR][1000 genomes]
rs12787392	0.92[EUR][1000 genomes]
rs12797320	1.00[EUR][1000 genomes]
rs16912310	0.92[AFR][1000 genomes]
rs1806938	0.83[EUR][1000 genomes]
rs1899539	0.83[EUR][1000 genomes]
rs2067816	1.00[AFR][1000 genomes]
rs2067817	1.00[AFR][1000 genomes]
rs34910206	1.00[EUR][1000 genomes]
rs35437571	1.00[EUR][1000 genomes]
rs35684622	0.83[EUR][1000 genomes]
rs4922677	1.00[EUR][1000 genomes]
rs4923166	1.00[EUR][1000 genomes]
rs55768275	0.82[AFR][1000 genomes]
rs55845061	0.92[EUR][1000 genomes]
rs55885149	0.96[AFR][1000 genomes]
rs56195433	1.00[AFR][1000 genomes]
rs66621531	0.92[EUR][1000 genomes]
rs67141418	1.00[EUR][1000 genomes]
rs67254921	1.00[EUR][1000 genomes]
rs72874143	0.83[EUR][1000 genomes]
rs72874173	0.92[EUR][1000 genomes]
rs72874179	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv897077	chr11:24091682-24308924	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467752	chr11:24190138-24267222	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv553782	chr11:24190138-24267222	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv467753	chr11:24190138-24335921	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553783	chr11:24190138-24335921	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897083	chr11:24210635-24346093	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1051026	chr11:24214723-24260429	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv897084	chr11:24232604-24308924	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv897085	chr11:24233998-24305935	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv467754	chr11:24246904-24290818	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv553784	chr11:24246904-24290818	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24255600-24257000	Enhancers	Stomach Mucosa	stomach
2	chr11:24255800-24257000	Enhancers	Gastric	stomach
3	chr11:24256200-24256800	Enhancers	Pancreas	Pancrea
4	chr11:24256200-24257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:24256400-24257000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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