Variant report

Variant	rs144399103
Chromosome Location	chr9:95957979-95957980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95957079..95960371-chr9:95962427..95964398,3	K562	blood:
2	chr9:95951384..95953897-chr9:95957626..95959182,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv415836	chr9:95957320-95957981	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95948200-95958400	Weak transcription	Lung	lung
2	chr9:95950000-95960800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:95950800-95967400	Enhancers	Fetal Heart	heart
4	chr9:95954600-95961600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:95954800-95959600	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:95955400-95959000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:95955600-95958200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:95955600-95961600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:95955800-95959000	Weak transcription	Right Atrium	heart
10	chr9:95955800-95960200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:95955800-95985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:95956000-95958200	Weak transcription	Left Ventricle	heart
13	chr9:95956000-95959000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:95956000-95959000	Weak transcription	Colonic Mucosa	Colon
15	chr9:95956000-95960000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:95956000-95960200	Weak transcription	Gastric	stomach
17	chr9:95956000-95960400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:95956000-95960400	Weak transcription	Psoas Muscle	Psoas
19	chr9:95956400-95958200	Weak transcription	Fetal Intestine Small	intestine
20	chr9:95956400-95958200	Weak transcription	Pancreas	Pancrea
21	chr9:95956600-95958200	Weak transcription	Fetal Intestine Large	intestine
22	chr9:95956600-95958400	Enhancers	HepG2	liver
23	chr9:95956600-95962600	Weak transcription	Brain Angular Gyrus	brain
24	chr9:95956800-95958200	Weak transcription	Right Ventricle	heart
25	chr9:95956800-95958200	Weak transcription	Small Intestine	intestine
26	chr9:95956800-95965000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:95957000-95958200	Weak transcription	Brain Anterior Caudate	brain
28	chr9:95957000-95960200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:95957000-95960200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:95957000-95963800	Weak transcription	Fetal Kidney	kidney
31	chr9:95957000-95973400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:95957200-95958200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:95957200-95958800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:95957200-95958800	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:95957200-95959000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:95957200-95959200	Weak transcription	Brain Germinal Matrix	brain
37	chr9:95957200-95959400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:95957200-95963200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:95957200-95963400	Weak transcription	Stomach Mucosa	stomach
40	chr9:95957400-95958600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:95957400-95958800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:95957400-95962200	Weak transcription	Fetal Brain Male	brain
43	chr9:95957400-95962200	Weak transcription	Fetal Brain Female	brain
44	chr9:95957400-95963200	Weak transcription	Fetal Lung	lung
45	chr9:95957600-95958000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:95957600-95958800	Enhancers	Fetal Thymus	thymus

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