The 2.0 version of rSNPBase

Variant report

Variant rs144553394
Chromosome Location chr6:143607938-143607939
allele -/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143570800-143609200 Weak transcription Fetal Intestine Large intestine
2 chr6:143583800-143615400 Weak transcription K562 blood
3 chr6:143598600-143620200 Weak transcription Brain Angular Gyrus brain
4 chr6:143600600-143609200 Weak transcription Brain Anterior Caudate brain
5 chr6:143603000-143611000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr6:143603200-143609600 Weak transcription Brain Cingulate Gyrus brain
7 chr6:143603200-143616800 Weak transcription Brain Inferior Temporal Lobe brain
8 chr6:143603200-143622200 Weak transcription Brain Hippocampus Middle brain
9 chr6:143604800-143608000 Weak transcription Esophagus oesophagus
10 chr6:143604800-143608200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr6:143604800-143609200 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr6:143605000-143608400 Enhancers Osteobl bone
13 chr6:143605200-143608600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr6:143605200-143608800 Enhancers Fetal Stomach stomach
15 chr6:143605200-143610400 Strong transcription Liver Liver
16 chr6:143605400-143614600 Weak transcription NHDF-Ad bronchial
17 chr6:143605600-143608800 Enhancers HMEC breast
18 chr6:143605600-143622000 Weak transcription HepG2 liver
19 chr6:143605800-143609400 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr6:143606200-143609400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr6:143606400-143608400 Enhancers Right Atrium heart
22 chr6:143606600-143608000 Weak transcription Colon Smooth Muscle Colon
23 chr6:143606600-143609200 Weak transcription H1 Cell Line embryonic stem cell
24 chr6:143606600-143609200 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr6:143606800-143609000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr6:143606800-143609200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr6:143606800-143611400 Weak transcription Fetal Intestine Small intestine
28 chr6:143607000-143608000 Enhancers Fetal Heart heart
29 chr6:143607000-143608400 Enhancers NH-A brain
30 chr6:143607000-143608800 Enhancers Cortex derived primary cultured neurospheres brain
31 chr6:143607000-143608800 Enhancers Duodenum Smooth Muscle Duodenum
32 chr6:143607000-143609400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr6:143607200-143609400 Weak transcription Primary hematopoietic stem cells blood
34 chr6:143607400-143608000 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr6:143607400-143608400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr6:143607400-143608400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr6:143607400-143608600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr6:143607400-143608600 Enhancers Aorta Aorta
39 chr6:143607400-143608800 Enhancers Ovary ovary
40 chr6:143607600-143608000 Enhancers Fetal Lung lung
41 chr6:143607600-143608000 Flanking Active TSS Stomach Smooth Muscle stomach
42 chr6:143607600-143622200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr6:143607800-143608000 Enhancers ES-WA7 Cell Line embryonic stem cell
44 chr6:143607800-143608200 Enhancers Lung lung
45 chr6:143607800-143608600 Enhancers Left Ventricle heart
46 chr6:143607800-143608800 Enhancers Rectal Smooth Muscle rectum
47 chr6:143607800-143608800 Enhancers NHEK skin
48 chr6:143607800-143609000 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015