Variant report

Variant	rs144574018
Chromosome Location	chr5:80180261-80180262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80176112..80177820-chr5:80178405..80181229,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv882231	chr5:79984714-80187929	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv598747	chr5:79996632-80322712	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016100	chr5:80023679-80254194	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1021784	chr5:80023679-80313586	ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv537787	chr5:80023679-80313586	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv1799323	chr5:80179312-80219650	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80091400-80181000	Weak transcription	Small Intestine	intestine
2	chr5:80145600-80181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:80163000-80181400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:80163200-80186600	Weak transcription	HSMMtube	muscle
5	chr5:80163200-80188400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:80167800-80180800	Weak transcription	K562	blood
7	chr5:80167800-80187200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:80169600-80190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:80171200-80183600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:80171200-80186400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:80171400-80196400	Weak transcription	Hela-S3	cervix
12	chr5:80171800-80186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:80172200-80186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:80173200-80181000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:80173600-80181400	Weak transcription	Ovary	ovary
16	chr5:80173600-80208000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:80173800-80181200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:80173800-80186200	Weak transcription	Fetal Brain Female	brain
19	chr5:80173800-80188600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:80174000-80180400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:80174000-80180600	Weak transcription	Fetal Intestine Small	intestine
22	chr5:80174000-80181000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:80174000-80181000	Weak transcription	NHEK	skin
24	chr5:80174000-80181400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:80174000-80181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:80174000-80181400	Weak transcription	Osteobl	bone
27	chr5:80174000-80183000	Weak transcription	Gastric	stomach
28	chr5:80174000-80185000	Weak transcription	Thymus	Thymus
29	chr5:80174000-80185000	Weak transcription	Dnd41	blood
30	chr5:80174000-80185600	Weak transcription	Lung	lung
31	chr5:80174000-80186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:80174000-80186400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:80174000-80186600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:80174000-80186600	Weak transcription	Fetal Lung	lung
35	chr5:80174000-80186800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:80174000-80187200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:80174000-80187200	Weak transcription	Right Ventricle	heart
38	chr5:80174000-80188200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr5:80174000-80188400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:80174000-80188400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:80174000-80188600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:80174000-80188600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:80174000-80190200	Weak transcription	Brain Anterior Caudate	brain
44	chr5:80174000-80190800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:80174000-80191200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr5:80174000-80191400	Weak transcription	Spleen	Spleen
47	chr5:80174000-80197000	Weak transcription	Left Ventricle	heart
48	chr5:80174200-80180400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr5:80174200-80180800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:80174200-80181000	Weak transcription	A549	lung

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