Variant report

Variant	rs144580777
Chromosome Location	chr19:39093024-39093025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39090721..39094839-chr19:39095384..39098942,6	K562	blood:
2	chr19:39091925..39094839-chr19:39095384..39098392,6	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv911663	chr19:38899548-39101879	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv911665	chr19:38924814-39101879	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv833826	chr19:38945106-39184547	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv833827	chr19:38993054-39184547	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv833828	chr19:39084759-39257979	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	esv3371676	chr19:39091312-39096310	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3372464	chr19:39092312-39095110	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39070600-39100000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr19:39074800-39101600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr19:39076600-39093200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr19:39077000-39101600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:39077200-39103200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr19:39086400-39096600	Weak transcription	Fetal Thymus	thymus
7	chr19:39086400-39098400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:39086800-39096600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:39087200-39107800	Weak transcription	Colonic Mucosa	Colon
10	chr19:39087400-39107400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr19:39087400-39108200	Weak transcription	Gastric	stomach
12	chr19:39087400-39108800	Weak transcription	Right Atrium	heart
13	chr19:39088200-39096200	Weak transcription	Spleen	Spleen
14	chr19:39088400-39096600	Weak transcription	Dnd41	blood
15	chr19:39088400-39098400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr19:39088600-39096200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr19:39088600-39100200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr19:39089200-39094200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr19:39090800-39094600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:39091000-39094400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr19:39091200-39094200	Weak transcription	GM12878-XiMat	blood
22	chr19:39091200-39094400	Weak transcription	K562	blood
23	chr19:39091200-39094800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr19:39091200-39095600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:39091400-39094600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr19:39091400-39095600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr19:39092200-39094200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr19:39092200-39095800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:39092400-39094800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr19:39092400-39095400	Weak transcription	Thymus	Thymus
31	chr19:39092400-39097000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr19:39092600-39094800	Weak transcription	Primary T cells from cord blood	blood
33	chr19:39092600-39095600	Weak transcription	Primary B cells from cord blood	blood
34	chr19:39092600-39109000	Weak transcription	Small Intestine	intestine
35	chr19:39092800-39094400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr19:39093000-39094600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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