Variant report

Variant	rs144663928
Chromosome Location	chr9:9442031-9442032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:9442023-9442311	GM12878	blood:	n/a	n/a
2	POLR2A	chr9:9441989-9442353	GM12878	blood:	n/a	n/a
3	HEY1	chr9:9442009-9442319	K562	blood:	n/a	n/a
4	HEY1	chr9:9442020-9442324	HepG2	liver:	n/a	n/a
5	USF1	chr9:9441991-9442341	A549	lung:	n/a	n/a
6	POLR2A	chr9:9441974-9442348	GM12891	blood:	n/a	n/a
7	SP1	chr9:9441988-9442284	GM12878	blood:	n/a	n/a
8	CTCF	chr9:9442009-9442372	A549	lung:	n/a	n/a
9	BATF	chr9:9442020-9442372	GM12878	blood:	n/a	n/a
10	POLR2A	chr9:9441992-9442305	Hela-S3	cervix:	n/a	n/a
11	SP1	chr9:9441998-9442344	HepG2	liver:	n/a	n/a
12	ZBTB33	chr9:9441993-9442305	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:9441967-9442355	GM12892	blood:	n/a	n/a
14	POLR2A	chr9:9441982-9442366	GM12892	blood:	n/a	n/a
15	JUND	chr9:9441964-9442336	A549	lung:	n/a	n/a
16	EBF1	chr9:9442017-9442320	GM12878	blood:	n/a	n/a
17	TAF1	chr9:9442027-9442293	Hela-S3	cervix:	n/a	n/a
18	USF1	chr9:9442004-9442341	A549	lung:	n/a	n/a
19	TCF12	chr9:9442031-9442313	GM12878	blood:	n/a	n/a
20	BCL11A	chr9:9442015-9442337	GM12878	blood:	n/a	n/a
21	POLR2A	chr9:9441997-9442352	GM12892	blood:	n/a	n/a
22	CTCF	chr9:9442030-9442325	A549	lung:	n/a	n/a
23	TCF12	chr9:9442029-9442291	GM12878	blood:	n/a	n/a
24	BHLHE40	chr9:9442013-9442278	HepG2	liver:	n/a	n/a
25	RXRA	chr9:9441966-9442392	HepG2	liver:	n/a	n/a
26	POLR2A	chr9:9441844-9442527	H1-hESC	embryonic stem cell:	n/a	n/a
27	RXRA	chr9:9442001-9442337	GM12878	blood:	n/a	n/a
28	BCL11A	chr9:9442026-9442309	GM12878	blood:	n/a	n/a
29	FOSL2	chr9:9441982-9442363	HepG2	liver:	n/a	n/a
30	USF1	chr9:9442012-9442327	A549	lung:	n/a	n/a
31	FOSL2	chr9:9441990-9442335	HepG2	liver:	n/a	n/a
32	POLR2A	chr9:9442006-9442345	PANC-1	pancreas:	n/a	n/a
33	MYBL2	chr9:9441986-9442353	HepG2	liver:	n/a	n/a
34	POLR2A	chr9:9442009-9442330	H1-hESC	embryonic stem cell:	n/a	n/a
35	ZBTB33	chr9:9441979-9442351	K562	blood:	n/a	n/a
36	POU2F2	chr9:9441997-9442386	GM12878	blood:	n/a	n/a
37	IRF4	chr9:9441996-9442360	GM12878	blood:	n/a	n/a
38	TAF1	chr9:9441907-9442392	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr9:9442027-9442311	GM12878	blood:	n/a	n/a
40	EP300	chr9:9441982-9442347	GM12878	blood:	n/a	n/a
41	POU2F2	chr9:9442011-9442389	GM12891	blood:	n/a	n/a
42	POU2F2	chr9:9441957-9442411	GM12891	blood:	n/a	n/a
43	IRF4	chr9:9441962-9442364	GM12878	blood:	n/a	n/a
44	PAX5	chr9:9441880-9442432	GM12878	blood:	n/a	chr9:9442338-9442347 chr9:9441996-9442005
45	ZBTB33	chr9:9442009-9442366	GM12878	blood:	n/a	n/a
46	POLR2A	chr9:9442002-9442314	H1-hESC	embryonic stem cell:	n/a	n/a
47	PAX5	chr9:9441994-9442348	GM12878	blood:	n/a	chr9:9442338-9442347 chr9:9441996-9442005
48	TCF12	chr9:9442029-9442324	HepG2	liver:	n/a	n/a
49	POLR2A	chr9:9442014-9442304	H1-hESC	embryonic stem cell:	n/a	n/a
50	JUND	chr9:9442006-9442290	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RN7SL5P	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892260	chr9:9350608-9474970	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv892262	chr9:9382331-9445270	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases
9	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1023820	chr9:9414754-9468456	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
11	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv528425	chr9:9437674-9556992	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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