Variant report

Variant	rs144667059
Chromosome Location	chr3:119344748-119344749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119326064..119328703-chr3:119343379..119345422,2	MCF-7	breast:
2	chr3:119337629..119339642-chr3:119343042..119344832,3	K562	blood:
3	chr3:119344313..119346275-chr3:119356031..119358042,2	K562	blood:

Variant related genes	Relation type
ENSG00000144837	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv3963	chr3:119301064-119345904	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv591363	chr3:119316828-119345950	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1795621	chr3:119344693-119353995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119320200-119345000	Weak transcription	Right Ventricle	heart
2	chr3:119322200-119349200	Weak transcription	Gastric	stomach
3	chr3:119340800-119357600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:119341400-119364600	Weak transcription	Liver	Liver
5	chr3:119342200-119345200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:119342400-119346400	Enhancers	GM12878-XiMat	blood
7	chr3:119342600-119346600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:119343200-119349200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:119343800-119349200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:119343800-119351400	Enhancers	Psoas Muscle	Psoas
11	chr3:119344000-119345200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:119344000-119345200	Enhancers	Fetal Heart	heart
13	chr3:119344000-119345800	Enhancers	Right Atrium	heart
14	chr3:119344000-119347600	Enhancers	Lung	lung
15	chr3:119344200-119344800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:119344200-119345200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:119344200-119345200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr3:119344200-119345400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:119344200-119345400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:119344200-119345600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:119344200-119349600	Enhancers	Spleen	Spleen
22	chr3:119344400-119345000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:119344400-119345400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:119344400-119345400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:119344400-119346000	Enhancers	Placenta	Placenta
26	chr3:119344400-119348400	Enhancers	Left Ventricle	heart
27	chr3:119344400-119351000	Weak transcription	Pancreas	Pancrea
28	chr3:119344600-119344800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr3:119344600-119345000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:119344600-119345000	Enhancers	K562	blood
31	chr3:119344600-119345200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr3:119344600-119346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:119344600-119346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:119344600-119352000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links