Variant report

Variant	rs1446722
Chromosome Location	chr2:77222206-77222207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10183619	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10186912	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10190179	0.81[CEU][hapmap]
rs10190510	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10193309	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10196758	1.00[CEU][hapmap]
rs10196801	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10196895	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10196939	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs12621674	0.95[CEU][hapmap]
rs13427514	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1348831	0.81[CEU][hapmap]
rs1374388	0.81[CEU][hapmap]
rs1374390	0.81[CEU][hapmap]
rs1446701	0.81[CEU][hapmap]
rs1446703	0.81[CEU][hapmap]
rs1446707	0.81[CEU][hapmap]
rs1446710	0.85[CEU][hapmap]
rs1446724	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1446725	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1470504	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1470505	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1470506	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs1470508	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1584235	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs1584237	0.95[CEU][hapmap]
rs1596913	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs2121410	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs2121411	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs2197603	0.81[CEU][hapmap]
rs4143794	0.85[CEU][hapmap]
rs4143796	0.85[CEU][hapmap]
rs4324338	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs6547114	0.81[CEU][hapmap]
rs6547115	0.84[CEU][hapmap]
rs6739222	0.81[CEU][hapmap]
rs7563917	0.90[CEU][hapmap]
rs7573982	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829468	chr2:77216448-77224533	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
5	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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