Variant report

Variant	rs144673760
Chromosome Location	chr10:61642348-61642349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61636740..61643413-chr10:61643807..61649213,6	K562	blood:
2	chr10:61639063..61643015-chr10:61647185..61650219,3	MCF-7	breast:
3	chr10:61636496..61638711-chr10:61641760..61644230,2	MCF-7	breast:
4	chr10:61628363..61632189-chr10:61637394..61643761,6	K562	blood:
5	chr10:61642094..61644181-chr10:61649311..61651720,2	K562	blood:
6	chr10:61640293..61643125-chr10:61664795..61666558,2	MCF-7	breast:
7	chr10:61641536..61643091-chr10:61645394..61647753,2	MCF-7	breast:
8	chr10:61641674..61643594-chr10:61648088..61650811,2	K562	blood:
9	chr10:61632537..61634435-chr10:61640656..61642857,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3436809	chr10:61640046-61644344	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3345456	chr10:61640771-61643719	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3500949	chr10:61641196-61643294	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv13888	chr10:61641666-61642417	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv820824	chr10:61641666-61642417	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:61633400-61643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:61633400-61645200	Weak transcription	Fetal Thymus	thymus
5	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
8	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:61633600-61645200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:61634000-61645000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:61634000-61645600	Weak transcription	Fetal Lung	lung
12	chr10:61634000-61646800	Weak transcription	Adipose Nuclei	Adipose
13	chr10:61634400-61648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:61634400-61649000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:61634400-61651200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:61634800-61645200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:61635000-61644000	Weak transcription	Brain Angular Gyrus	brain
18	chr10:61635000-61645400	Weak transcription	Brain Substantia Nigra	brain
19	chr10:61635000-61646800	Weak transcription	Right Ventricle	heart
20	chr10:61635600-61647600	Weak transcription	Brain Anterior Caudate	brain
21	chr10:61635800-61648600	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:61637400-61645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:61637400-61647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:61637400-61648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:61637600-61645200	Weak transcription	Right Atrium	heart
26	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
27	chr10:61637800-61645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:61637800-61648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:61637800-61649200	Weak transcription	HMEC	breast
30	chr10:61637800-61653600	Weak transcription	NH-A	brain
31	chr10:61638200-61646800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:61638400-61647000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:61638400-61653600	Weak transcription	Osteobl	bone
36	chr10:61638600-61646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:61638600-61647800	Weak transcription	Ovary	ovary
38	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
39	chr10:61638800-61643600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:61639400-61645200	Weak transcription	Liver	Liver
41	chr10:61639600-61645000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:61639600-61648800	Weak transcription	Thymus	Thymus
43	chr10:61639800-61646600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:61640200-61645600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:61640200-61647800	Weak transcription	Aorta	Aorta
46	chr10:61640600-61648800	Weak transcription	HepG2	liver
47	chr10:61640800-61645000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:61641000-61645200	Weak transcription	Left Ventricle	heart
49	chr10:61641000-61648000	Weak transcription	Gastric	stomach
50	chr10:61641000-61648200	Weak transcription	Fetal Intestine Large	intestine

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