Variant report

Variant	rs1446942
Chromosome Location	chr4:22824767-22824768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOD3-13	chr4:22823158-22825371	NONHSAT095768

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1485822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1485825	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873132	0.82[AMR][1000 genomes]
rs1843482	0.97[AMR][1000 genomes]
rs1994304	0.97[AMR][1000 genomes]
rs2011996	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2046473	0.93[AMR][1000 genomes]
rs3912484	0.97[AMR][1000 genomes]
rs3929303	0.88[AFR][1000 genomes]
rs4306940	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4697023	0.97[AMR][1000 genomes]
rs4697024	0.90[AMR][1000 genomes]
rs4697025	0.97[AMR][1000 genomes]
rs4697334	0.93[AMR][1000 genomes]
rs4697335	0.97[AMR][1000 genomes]
rs4697337	0.97[AMR][1000 genomes]
rs4697341	0.97[AMR][1000 genomes]
rs4697342	0.97[AMR][1000 genomes]
rs4697343	0.97[AMR][1000 genomes]
rs4697345	0.97[AMR][1000 genomes]
rs4697346	0.97[AMR][1000 genomes]
rs4697347	0.97[AMR][1000 genomes]
rs4697348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57024544	1.00[EUR][1000 genomes]
rs57088167	0.90[AMR][1000 genomes]
rs57172857	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57398192	0.90[AMR][1000 genomes]
rs57405986	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57416765	0.97[AMR][1000 genomes]
rs57470151	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57472271	0.90[AMR][1000 genomes]
rs57658078	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58227029	0.93[AMR][1000 genomes]
rs58410026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58424918	0.97[AMR][1000 genomes]
rs59809824	0.97[AMR][1000 genomes]
rs59935140	0.97[AMR][1000 genomes]
rs60010975	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60034792	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60522537	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60968974	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61233864	0.90[AMR][1000 genomes]
rs61543347	1.00[EUR][1000 genomes]
rs61573992	1.00[AFR][1000 genomes]
rs6811321	0.97[AMR][1000 genomes]
rs73117145	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73117146	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117148	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117152	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117153	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117155	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117157	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117160	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117161	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117164	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117169	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117170	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73117177	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73117178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73117181	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7657589	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005733	chr4:22747306-22833517	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22786000-22828600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:22822000-22833800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:22824400-22825000	Strong transcription	Liver	Liver

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