Variant report

Variant	rs144731908
Chromosome Location	chr2:20315580-20315581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20313769..20315604-chr2:20340680..20342893,2	MCF-7	breast:
2	chr2:20313389..20316167-chr2:20411646..20415090,3	MCF-7	breast:
3	chr2:20312716..20316154-chr2:20394135..20396612,3	MCF-7	breast:
4	chr2:20302713..20305705-chr2:20312784..20315987,4	MCF-7	breast:
5	chr2:20309388..20317484-chr2:20420940..20426619,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009521	chr2:20310479-20388959	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3323329	chr2:20314271-20318569	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20306600-20318400	Enhancers	Placenta	Placenta
2	chr2:20306800-20318200	Weak transcription	Right Ventricle	heart
3	chr2:20308000-20322200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:20311800-20315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:20312400-20316600	Enhancers	Esophagus	oesophagus
6	chr2:20312800-20316800	Enhancers	Fetal Intestine Large	intestine
7	chr2:20313000-20316200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:20313000-20316600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:20313000-20316800	Enhancers	Fetal Intestine Small	intestine
10	chr2:20313000-20317000	Enhancers	Stomach Mucosa	stomach
11	chr2:20313200-20315800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr2:20313200-20316200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:20313200-20316400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr2:20313200-20316800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:20313400-20316200	Enhancers	NHEK	skin
16	chr2:20313400-20316600	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr2:20314000-20316600	Enhancers	Gastric	stomach
18	chr2:20314200-20318000	Weak transcription	Spleen	Spleen
19	chr2:20314200-20322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:20314400-20316400	Enhancers	Colonic Mucosa	Colon
21	chr2:20314800-20317000	Weak transcription	Small Intestine	intestine
22	chr2:20315000-20316800	Enhancers	Duodenum Mucosa	Duodenum
23	chr2:20315000-20317200	Enhancers	HepG2	liver
24	chr2:20315400-20316400	Enhancers	Hela-S3	cervix

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