Variant report

Variant	rs1447386
Chromosome Location	chr5:98465972-98465973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10073967	1.00[ASN][1000 genomes]
rs10477873	0.92[YRI][hapmap]
rs11954515	1.00[ASN][1000 genomes]
rs12109206	1.00[ASN][1000 genomes]
rs13357966	1.00[ASN][1000 genomes]
rs28478843	1.00[ASN][1000 genomes]
rs28624122	1.00[ASN][1000 genomes]
rs28676866	1.00[ASN][1000 genomes]
rs60069415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73146510	1.00[ASN][1000 genomes]
rs73773645	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs980598	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv882417	chr5:98428184-98548315	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv482367	chr5:98440337-98606909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv882418	chr5:98447682-98694849	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98465200-98466200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:98465200-98466600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:98465400-98466000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:98465400-98466200	Enhancers	Adipose Nuclei	Adipose
5	chr5:98465600-98466000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:98465600-98466000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:98465600-98466000	Enhancers	Fetal Kidney	kidney
8	chr5:98465600-98466200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:98465600-98466200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:98465600-98466600	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:98465800-98466200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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