Variant report

Variant	rs1447739
Chromosome Location	chr3:143415711-143415712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1242047	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1242048	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242051	0.89[EUR][1000 genomes]
rs1242052	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1242053	0.89[EUR][1000 genomes]
rs1242055	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1242059	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242060	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242062	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242063	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242069	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242071	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242072	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242078	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1242080	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1268369	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1270765	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1447736	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447737	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1868176	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73152842	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73152843	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73152844	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73152845	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7648523	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7653163	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs935518	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9877738	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877566	chr3:143397740-143421221	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143403400-143416800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:143407600-143417600	Weak transcription	Fetal Lung	lung
5	chr3:143410800-143416400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:143412800-143416600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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