Variant report

Variant	rs144826875
Chromosome Location	chr11:119776166-119776167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119770243..119773277-chr11:119775684..119777431,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2523D13.1.1-4	chr11:119776058-119776431	XLOC_009301
2	lnc-CTD-2523D13.1.1-4	chr11:119776057-119776431	NONHSAT024691

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119772600-119779800	Enhancers	Liver	Liver
4	chr11:119773600-119776200	Enhancers	Fetal Intestine Large	intestine
5	chr11:119773600-119776200	Enhancers	Fetal Intestine Small	intestine
6	chr11:119773800-119776600	Enhancers	Esophagus	oesophagus
7	chr11:119774200-119778400	Enhancers	Pancreas	Pancrea
8	chr11:119774400-119777600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:119774400-119778800	Weak transcription	Brain Substantia Nigra	brain
10	chr11:119774600-119776400	Enhancers	Small Intestine	intestine
11	chr11:119774600-119776600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:119774600-119776800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:119774600-119778400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:119774600-119778400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:119775000-119776800	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr11:119775200-119780200	Enhancers	Placenta	Placenta
17	chr11:119775400-119776200	Active TSS	Colonic Mucosa	Colon
18	chr11:119775400-119776600	Enhancers	Fetal Heart	heart
19	chr11:119775400-119780400	Weak transcription	Gastric	stomach
20	chr11:119775800-119776200	Flanking Active TSS	Stomach Mucosa	stomach
21	chr11:119775800-119777600	Weak transcription	Spleen	Spleen
22	chr11:119775800-119777800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:119775800-119781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:119776000-119776200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:119776000-119776800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr11:119776000-119777000	Weak transcription	Fetal Lung	lung
27	chr11:119776000-119777200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr11:119776000-119777800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links