Variant report

Variant	rs144873702
Chromosome Location	chr3:46016687-46016688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46011530..46014566-chr3:46015264..46018457,3	K562	blood:
2	chr3:46015505..46018391-chr3:46024106..46026296,2	K562	blood:
3	chr3:46014022..46017742-chr3:46018515..46020350,3	MCF-7	breast:
4	chr3:46009297..46011383-chr3:46015916..46019063,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45981600-46025000	Strong transcription	Fetal Intestine Large	intestine
2	chr3:45986400-46026600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:45986600-46026800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:45987200-46027200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:45987400-46026600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:45987800-46026400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:45987800-46026800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:45987800-46027200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:45988000-46026600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:45990600-46017200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr3:45991200-46017400	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr3:45996200-46025400	Strong transcription	Liver	Liver
13	chr3:45999400-46018200	Strong transcription	Fetal Lung	lung
14	chr3:46000000-46029600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:46002200-46018600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:46002600-46025000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:46002600-46027200	Weak transcription	A549	lung
18	chr3:46007800-46024200	Weak transcription	Fetal Kidney	kidney
19	chr3:46008600-46026400	Strong transcription	Hela-S3	cervix
20	chr3:46009000-46027800	Weak transcription	Fetal Brain Male	brain
21	chr3:46009200-46017000	Weak transcription	Stomach Mucosa	stomach
22	chr3:46009600-46018000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:46010200-46021000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:46010200-46022600	Weak transcription	Brain Angular Gyrus	brain
25	chr3:46010200-46024200	Strong transcription	Left Ventricle	heart
26	chr3:46010200-46027000	Weak transcription	Fetal Brain Female	brain
27	chr3:46010200-46029600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:46010200-46033000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:46010600-46017400	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:46010600-46020800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:46010800-46022400	Weak transcription	Fetal Heart	heart
32	chr3:46011400-46020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:46012000-46020800	Weak transcription	Ovary	ovary
34	chr3:46013000-46017200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:46013000-46019200	Strong transcription	Adipose Nuclei	Adipose
36	chr3:46013000-46026200	Weak transcription	Brain Germinal Matrix	brain
37	chr3:46013200-46017000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:46013200-46017600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:46013600-46017600	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr3:46013600-46017800	Genic enhancers	Thymus	Thymus
41	chr3:46013600-46018000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:46013600-46021000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:46013600-46023000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:46013600-46025000	Strong transcription	Fetal Intestine Small	intestine
45	chr3:46013600-46025400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr3:46013600-46025600	Strong transcription	Fetal Stomach	stomach
47	chr3:46013600-46034000	Genic enhancers	Fetal Thymus	thymus
48	chr3:46013800-46016800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:46013800-46017600	Genic enhancers	Dnd41	blood
50	chr3:46013800-46018000	Genic enhancers	Skeletal Muscle Female	skeletal muscle

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