Variant report

Variant	rs1448862
Chromosome Location	chr2:187346182-187346183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13026729	1.00[AFR][1000 genomes]
rs2012972	1.00[AFR][1000 genomes]
rs6728647	1.00[AFR][1000 genomes]
rs7558280	1.00[AFR][1000 genomes]
rs7590157	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187320600-187347400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:187328000-187350400	Weak transcription	Pancreas	Pancrea
3	chr2:187337000-187347000	Weak transcription	HepG2	liver
4	chr2:187337000-187348000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:187339800-187347400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:187339800-187348400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:187339800-187349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:187344000-187348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:187345000-187347400	Enhancers	NHEK	skin
10	chr2:187345400-187346200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:187345400-187346400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:187345800-187346200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:187345800-187346200	Flanking Active TSS	HMEC	breast
14	chr2:187345800-187346400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:187345800-187346400	Enhancers	Fetal Intestine Small	intestine
16	chr2:187345800-187346600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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