Variant report

Variant	rs144960386
Chromosome Location	chr5:177365727-177365728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv883184	chr5:177311043-177488281	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv883185	chr5:177357964-177401509	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv521629	chr5:177364884-177396200	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3322005	chr5:177364896-177365844	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv3377185	chr5:177365371-177368219	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177358000-177365800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:177358000-177365800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:177364800-177366200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr5:177365200-177366000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr5:177365400-177365800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:177365400-177365800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:177365400-177365800	Enhancers	Placenta	Placenta
8	chr5:177365400-177366000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:177365400-177366200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:177365400-177366200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr5:177365600-177365800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:177365600-177365800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:177365600-177365800	Enhancers	Pancreas	Pancrea
16	chr5:177365600-177366000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:177365600-177366000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr5:177365600-177366000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:177365600-177366000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:177365600-177366000	Bivalent Enhancer	Fetal Brain Female	brain
21	chr5:177365600-177366000	Bivalent Enhancer	Fetal Intestine Small	intestine
22	chr5:177365600-177366200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:177365600-177366200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr5:177365600-177366200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr5:177365600-177366400	Enhancers	Primary B cells from peripheral blood	blood
26	chr5:177365600-177366800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr5:177365600-177366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr5:177365600-177366800	Enhancers	Primary B cells from cord blood	blood
29	chr5:177365600-177367000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:177365600-177368200	Active TSS	Pancreatic Islets	Pancreatic Islet

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