Variant report

Variant	rs144976549
Chromosome Location	chr4:87770236-87770237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87767000-87771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:87768000-87770800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:87768200-87771400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:87768800-87770400	Active TSS	Esophagus	oesophagus
5	chr4:87768800-87770600	Enhancers	HMEC	breast
6	chr4:87769000-87770400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:87769000-87770800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr4:87769200-87770400	Active TSS	Left Ventricle	heart
9	chr4:87769200-87770600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:87769200-87771200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:87769400-87770400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:87769400-87770400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:87769400-87770600	Enhancers	Spleen	Spleen
14	chr4:87769600-87770600	Enhancers	NHDF-Ad	bronchial
15	chr4:87769600-87771200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:87769600-87771600	Enhancers	Fetal Muscle Trunk	muscle
17	chr4:87769600-87771600	Flanking Active TSS	NHEK	skin
18	chr4:87769600-87776800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:87769800-87771600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:87769800-87778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:87770000-87770400	Flanking Active TSS	Right Atrium	heart
22	chr4:87770000-87771600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr4:87770200-87770400	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr4:87770200-87770400	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr4:87770200-87770400	Active TSS	Stomach Smooth Muscle	stomach
26	chr4:87770200-87770600	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr4:87770200-87770600	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr4:87770200-87770600	Active TSS	Psoas Muscle	Psoas
29	chr4:87770200-87771200	Enhancers	Brain Anterior Caudate	brain
30	chr4:87770200-87771200	Enhancers	Brain Cingulate Gyrus	brain
31	chr4:87770200-87771600	Flanking Active TSS	Hela-S3	cervix
32	chr4:87770200-87776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links