Variant report

Variant	rs1450337
Chromosome Location	chr3:150052599-150052600
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150049487..150053586-chr3:150054958..150059375,5	MCF-7	breast:
2	chr3:150049522..150052674-chr3:150126551..150129363,3	K562	blood:
3	chr3:150048454..150052986-chr3:150087441..150091214,5	MCF-7	breast:
4	chr3:150046882..150048829-chr3:150050271..150053000,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9813497	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv3409134	chr3:150052322-150052646	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:150043400-150059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:150043800-150052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:150046600-150053200	Weak transcription	HSMMtube	muscle
5	chr3:150048000-150052800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:150049600-150053200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:150049800-150053800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150050800-150053800	Enhancers	NHEK	skin
9	chr3:150050800-150055200	Enhancers	HMEC	breast
10	chr3:150051400-150054000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:150051600-150052600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:150051800-150052800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:150051800-150052800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:150052200-150053400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:150052400-150052600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:150052400-150053200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:150052400-150053400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:150052400-150054000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:150052400-150054000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:150052400-150054600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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