Variant report

Variant	rs145038303
Chromosome Location	chr3:141165121-141165122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:141164932-141165190	IMR90	lung:	n/a	chr3:141165022-141165037
2	MAFK	chr3:141164859-141165170	HepG2	liver:	n/a	chr3:141165022-141165037
3	MAFF	chr3:141164927-141165178	HepG2	liver:	n/a	chr3:141165020-141165038
4	MAFK	chr3:141164865-141165195	HepG2	liver:	n/a	chr3:141165022-141165037

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141087300..141088860-chr3:141163731..141166703,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv819098	chr3:141164361-141165148	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
3	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
4	chr3:141159600-141165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141160400-141165200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:141160400-141166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:141160400-141166600	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:141160400-141166800	Strong transcription	A549	lung
9	chr3:141160400-141167400	Strong transcription	HSMM	muscle
10	chr3:141160400-141169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:141160600-141166600	Strong transcription	HepG2	liver
13	chr3:141160600-141166800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr3:141160800-141166600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:141161000-141165200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:141161000-141165800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:141161000-141166800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr3:141161000-141166800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:141161200-141165800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:141161200-141166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:141161200-141166400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:141161200-141166600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr3:141161200-141166600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:141161200-141166600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr3:141161200-141166600	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:141161200-141166800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:141161200-141166800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:141161200-141166800	Strong transcription	Adipose Nuclei	Adipose
29	chr3:141161200-141166800	Strong transcription	Liver	Liver
30	chr3:141161200-141166800	Strong transcription	Fetal Brain Female	brain
31	chr3:141161200-141166800	Strong transcription	GM12878-XiMat	blood
32	chr3:141161200-141167400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:141161200-141169000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:141161400-141166600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr3:141161400-141166600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:141161400-141166600	Strong transcription	HSMMtube	muscle
37	chr3:141161400-141166800	Strong transcription	HUVEC	blood vessel
38	chr3:141161400-141166800	Strong transcription	NHEK	skin
39	chr3:141161400-141167000	Genic enhancers	NHLF	lung
40	chr3:141161600-141166800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:141161600-141166800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:141161600-141166800	Strong transcription	HMEC	breast
43	chr3:141161600-141167000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:141161600-141167200	Strong transcription	NH-A	brain
45	chr3:141161800-141166600	Strong transcription	Pancreas	Pancrea
46	chr3:141162000-141166400	Strong transcription	NHDF-Ad	bronchial
47	chr3:141162200-141166800	Strong transcription	Fetal Lung	lung
48	chr3:141162400-141166400	Weak transcription	Right Atrium	heart
49	chr3:141162400-141166600	Strong transcription	Fetal Muscle Leg	muscle
50	chr3:141162400-141166800	Strong transcription	Placenta	Placenta

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