Variant report

Variant	rs145043005
Chromosome Location	chr1:173608017-173608018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415007	chr1:173606736-173611929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173606800-173609600	Active TSS	H1 Cell Line	embryonic stem cell
2	chr1:173606800-173611400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr1:173607000-173609200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:173607400-173608400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:173607400-173608600	Enhancers	K562	blood
6	chr1:173607400-173609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:173607600-173609000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr1:173607800-173608800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:173607800-173610400	Weak transcription	Pancreas	Pancrea
11	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:173608000-173608400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:173608000-173608400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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