Variant report

Variant	rs145071523
Chromosome Location	chr1:169914634-169914635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169906887..169908799-chr1:169914040..169915551,2	MCF-7	breast:
2	chr1:169913226..169915577-chr1:169917390..169920061,2	MCF-7	breast:
3	chr1:169863023..169865011-chr1:169913232..169916470,3	MCF-7	breast:
4	chr1:169894940..169897093-chr1:169912669..169915603,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000000457	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1007190	chr1:169890542-169929582	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv997360	chr1:169892284-169946436	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1015110	chr1:169892661-169929582	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1013271	chr1:169892661-169960549	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010007	chr1:169895282-169946436	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1003588	chr1:169895984-169946436	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv998382	chr1:169899427-169929582	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1011978	chr1:169899427-169946436	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv997289	chr1:169899427-169960549	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1012520	chr1:169899427-169969444	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1003803	chr1:169901733-169929582	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1001670	chr1:169901733-169956450	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv1004999	chr1:169901733-169960549	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1009843	chr1:169903077-169950341	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1012222	chr1:169903862-169950341	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1006673	chr1:169913597-169946436	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1005982	chr1:169913597-169958219	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1001013	chr1:169913597-169960549	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169878400-169946200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169886600-169915600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:169904000-169929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:169904000-169934800	Weak transcription	Fetal Heart	heart
5	chr1:169904000-169949800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:169904000-170010400	Weak transcription	Aorta	Aorta
7	chr1:169905200-169915400	Weak transcription	GM12878-XiMat	blood
8	chr1:169909200-169946000	Weak transcription	Primary T cells from cord blood	blood
9	chr1:169910400-169946200	Weak transcription	Primary B cells from cord blood	blood
10	chr1:169911200-169914800	Weak transcription	Gastric	stomach
11	chr1:169911200-169948800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:169911400-169923000	Weak transcription	Liver	Liver
13	chr1:169911400-169946200	Weak transcription	Dnd41	blood
14	chr1:169911400-169948600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:169911600-169918400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:169911600-169927000	Weak transcription	Fetal Intestine Large	intestine
17	chr1:169911600-169945800	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:169911800-169914800	Weak transcription	Fetal Lung	lung
19	chr1:169911800-169946400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:169911800-169949600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:169911800-169951200	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:169911800-169968400	Weak transcription	Psoas Muscle	Psoas
23	chr1:169912000-169918600	Weak transcription	NHLF	lung
24	chr1:169912000-169922400	Weak transcription	HSMM	muscle
25	chr1:169912000-169946200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:169912000-169953600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:169912000-169966000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:169912000-169968600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr1:169912400-169918000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:169912400-169918200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:169912400-169950400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:169912600-169915200	Weak transcription	Right Atrium	heart
33	chr1:169912600-169915400	Weak transcription	Right Ventricle	heart
34	chr1:169912600-169918800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:169912800-169967200	Weak transcription	NHDF-Ad	bronchial
36	chr1:169913000-169914800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:169913000-169914800	Strong transcription	Left Ventricle	heart
38	chr1:169913200-169914800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:169913200-169914800	Strong transcription	Fetal Intestine Small	intestine
40	chr1:169913400-169953600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr1:169913600-169915600	Weak transcription	Pancreas	Pancrea
42	chr1:169913800-169915400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:169913800-169916000	Enhancers	Hela-S3	cervix
44	chr1:169913800-169917000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:169913800-169938800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:169913800-169968400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:169914000-169915800	Weak transcription	Thymus	Thymus
48	chr1:169914000-169920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:169914000-169945800	Weak transcription	Adipose Nuclei	Adipose
50	chr1:169914000-169946200	Weak transcription	Rectal Mucosa Donor 29	rectum

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