Variant report

Variant	rs1450902
Chromosome Location	chr4:62669102-62669103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10517548	0.89[AFR][1000 genomes]
rs1470722	0.89[AFR][1000 genomes]
rs17226265	0.87[AFR][1000 genomes]
rs17292030	0.89[AFR][1000 genomes]
rs17292037	0.89[AFR][1000 genomes]
rs17292044	0.92[AFR][1000 genomes]
rs2345042	0.89[AFR][1000 genomes]
rs35680649	0.89[AFR][1000 genomes]
rs57991081	0.89[AFR][1000 genomes]
rs58739264	0.89[AFR][1000 genomes]
rs60536298	0.89[AFR][1000 genomes]
rs60683749	0.92[AFR][1000 genomes]
rs6814909	0.89[AFR][1000 genomes]
rs6824026	0.89[AFR][1000 genomes]
rs6839737	0.84[AFR][1000 genomes]
rs6839996	0.89[AFR][1000 genomes]
rs6846860	0.89[AFR][1000 genomes]
rs73823242	0.89[AFR][1000 genomes]
rs73823243	0.89[AFR][1000 genomes]
rs73823248	0.92[AFR][1000 genomes]
rs7654504	0.89[AFR][1000 genomes]
rs7657806	0.85[AFR][1000 genomes]
rs7671445	0.87[AFR][1000 genomes]
rs7676199	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62662800-62682400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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