Variant report

Variant	rs145100659
Chromosome Location	chr7:106684792-106684793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr7:106684529-106685199	K562	blood:	n/a	chr7:106684780-106684787 chr7:106684622-106684636
2	ZNF263	chr7:106684780-106686238	HEK293-T-REx	kidney:	n/a	n/a
3	ETS1	chr7:106684677-106685623	K562	blood:	n/a	n/a
4	MXI1	chr7:106684790-106685180	HepG2	liver:	n/a	chr7:106684881-106684890 chr7:106685010-106685019 chr7:106684992-106685007
5	MAX	chr7:106684700-106685195	K562	blood:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
6	ZBTB7A	chr7:106684721-106685988	K562	blood:	n/a	chr7:106685308-106685317
7	SIN3AK20	chr7:106684675-106685150	K562	blood:	n/a	n/a
8	RAD21	chr7:106684731-106685255	SK-N-SH_RA	brain:	n/a	chr7:106684942-106684955
9	HCFC1	chr7:106684670-106685604	K562	blood:	n/a	n/a
10	THAP1	chr7:106684698-106685204	K562	blood:	n/a	n/a
11	MXI1	chr7:106684781-106685156	K562	blood:	n/a	chr7:106684881-106684890 chr7:106685010-106685019 chr7:106684992-106685007
12	HMGN3	chr7:106684724-106685873	K562	blood:	n/a	n/a
13	MAX	chr7:106684779-106685188	HUVEC	blood vessel:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
14	MAX	chr7:106684671-106685207	SK-N-SH	brain:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
15	YY1	chr7:106684694-106685355	HepG2	liver:	n/a	chr7:106684933-106684947 chr7:106685274-106685285 chr7:106685312-106685326 chr7:106685318-106685327
16	MAZ	chr7:106684395-106685532	IMR90	lung:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
17	USF1	chr7:106684701-106685244	SK-N-SH	brain:	n/a	chr7:106685009-106685020
18	USF1	chr7:106684704-106685145	A549	lung:	n/a	chr7:106685009-106685020
19	RCOR1	chr7:106684567-106685542	K562	blood:	n/a	n/a
20	USF1	chr7:106684738-106685151	A549	lung:	n/a	chr7:106685009-106685020
21	POLR2A	chr7:106684557-106685175	SK-N-MC	brain:	n/a	n/a
22	MXI1	chr7:106684778-106685422	H1-hESC	embryonic stem cell:	n/a	chr7:106684881-106684890 chr7:106685010-106685019 chr7:106684992-106685007
23	EP300	chr7:106684733-106685198	SK-N-SH_RA	brain:	n/a	chr7:106684929-106684945
24	TAF1	chr7:106684655-106684994	H1-neurons	neurons:	n/a	n/a
25	POLR2A	chr7:106684720-106685371	K562	blood:	n/a	n/a
26	POLR2A	chr7:106684445-106686220	H1-neurons	neurons:	n/a	n/a
27	MAX	chr7:106684713-106685181	A549	lung:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
28	MAX	chr7:106684598-106685713	A549	lung:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
29	ELF1	chr7:106684719-106685649	K562	blood:	n/a	n/a
30	USF1	chr7:106684779-106685158	H1-hESC	embryonic stem cell:	n/a	chr7:106685009-106685020
31	USF1	chr7:106684771-106685157	GM12878	blood:	n/a	chr7:106685009-106685020
32	RAD21	chr7:106684718-106685627	SK-N-SH_RA	brain:	n/a	chr7:106684942-106684955
33	USF1	chr7:106684629-106685253	HCT-116	colon:	n/a	chr7:106685009-106685020
34	POLR2A	chr7:106684679-106685542	K562	blood:	n/a	n/a
35	BCLAF1	chr7:106684725-106685549	K562	blood:	n/a	chr7:106685276-106685289 chr7:106685273-106685286
36	MAX	chr7:106684653-106685225	H1-hESC	embryonic stem cell:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
37	UBTF	chr7:106684704-106686321	K562	blood:	n/a	n/a
38	CTBP2	chr7:106684634-106685410	H1-hESC	embryonic stem cell:	n/a	n/a
39	HEY1	chr7:106684693-106685581	K562	blood:	n/a	chr7:106684962-106684977 chr7:106685319-106685334 chr7:106684964-106684979 chr7:106685310-106685325 chr7:106684931-106684946 chr7:106685229-106685244 chr7:106684971-106684986 chr7:106685273-106685288
40	E2F6	chr7:106684656-106685074	H1-hESC	embryonic stem cell:	n/a	chr7:106685014-106685028 chr7:106684973-106684983
41	ZNF143	chr7:106684757-106685529	H1-hESC	embryonic stem cell:	n/a	n/a
42	TAF1	chr7:106684689-106685576	SK-N-SH	brain:	n/a	n/a
43	CBX3	chr7:106684434-106685168	K562	blood:	n/a	n/a
44	YY1	chr7:106684635-106685653	SK-N-SH_RA	brain:	n/a	chr7:106685501-106685521 chr7:106684933-106684947 chr7:106685274-106685285 chr7:106685312-106685326 chr7:106685318-106685327
45	NRF1	chr7:106684325-106686054	SK-N-SH	brain:	n/a	chr7:106685248-106685262
46	MAX	chr7:106684684-106685216	K562	blood:	n/a	chr7:106684992-106685001 chr7:106685011-106685020 chr7:106685010-106685021 chr7:106685013-106685022
47	RCOR1	chr7:106684657-106685548	K562	blood:	n/a	n/a
48	TAF1	chr7:106684571-106685616	H1-neurons	neurons:	n/a	n/a
49	ZBTB7A	chr7:106684643-106685150	ECC-1	luminal epithelium:	n/a	n/a
50	USF1	chr7:106684647-106685178	K562	blood:	n/a	chr7:106685009-106685020

No.	Distal block	Cell Line	Cell type
1	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
2	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
3	chr7:106683838..106685682-chr7:106808625..106810626,2	MCF-7	breast:
4	chr7:106415431..106417500-chr7:106684365..106686505,2	K562	blood:

Variant related genes	Relation type
PRKAR2B	TF binding region
ENSG00000105856	Chromatin interaction
ENSG00000228742	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3440198	chr7:106684366-106686514	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106684000-106685000	Flanking Active TSS	K562	blood
2	chr7:106684200-106685000	Flanking Active TSS	Fetal Brain Male	brain
3	chr7:106684200-106686400	Active TSS	Stomach Smooth Muscle	stomach
4	chr7:106684400-106684800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
5	chr7:106684400-106684800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:106684400-106684800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:106684400-106684800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:106684400-106684800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:106684400-106684800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr7:106684400-106684800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr7:106684400-106684800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
12	chr7:106684400-106684800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:106684400-106684800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr7:106684400-106684800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
15	chr7:106684400-106684800	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr7:106684400-106684800	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr7:106684400-106684800	Flanking Active TSS	NH-A	brain
18	chr7:106684400-106685000	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr7:106684400-106685000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr7:106684400-106685000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:106684400-106685000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr7:106684400-106685000	Flanking Active TSS	Fetal Brain Female	brain
23	chr7:106684400-106685000	Active TSS	Right Atrium	heart
24	chr7:106684400-106685000	Flanking Bivalent TSS/Enh	Dnd41	blood
25	chr7:106684400-106685000	Flanking Active TSS	HUVEC	blood vessel
26	chr7:106684400-106685400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:106684400-106685400	Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:106684400-106685400	Active TSS	Fetal Muscle Leg	muscle
29	chr7:106684400-106685400	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr7:106684400-106685600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:106684400-106685600	Active TSS	A549	lung
32	chr7:106684400-106685800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:106684400-106685800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:106684400-106685800	Active TSS	Colon Smooth Muscle	Colon
35	chr7:106684400-106685800	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr7:106684400-106686000	Active TSS	Brain Hippocampus Middle	brain
37	chr7:106684400-106686000	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr7:106684400-106686000	Active TSS	Fetal Lung	lung
39	chr7:106684400-106686200	Active TSS	NHDF-Ad	bronchial
40	chr7:106684400-106686400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:106684400-106686400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr7:106684400-106686400	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr7:106684400-106686400	Active TSS	NHLF	lung
44	chr7:106684400-106686600	Active TSS	Brain Substantia Nigra	brain
45	chr7:106684400-106686800	Active TSS	Rectal Smooth Muscle	rectum
46	chr7:106684400-106687000	Active TSS	Brain Anterior Caudate	brain
47	chr7:106684400-106687000	Active TSS	Fetal Stomach	stomach
48	chr7:106684400-106687200	Active TSS	Ovary	ovary
49	chr7:106684400-106688400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:106684600-106684800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links