Variant report

Variant	rs145145404
Chromosome Location	chr4:76480527-76480528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv2525937	chr4:76479338-76480842	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76458400-76480800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:76458800-76480600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:76458800-76480600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:76465800-76480600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:76468400-76480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:76470600-76480600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:76471800-76480800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:76473600-76480600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:76474800-76480800	Weak transcription	HSMMtube	muscle
10	chr4:76480200-76480800	Enhancers	NHEK	skin
11	chr4:76480200-76481400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:76480400-76480600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:76480400-76480600	Enhancers	GM12878-XiMat	blood
14	chr4:76480400-76480800	Enhancers	HMEC	breast
15	chr4:76480400-76480800	Enhancers	NH-A	brain
16	chr4:76480400-76481000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:76480400-76481400	Enhancers	Placenta	Placenta
18	chr4:76480400-76481800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:76480400-76481800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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