Variant report

Variant	rs145146576
Chromosome Location	chr4:15776195-15776196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr4:15775711-15776286	A549	lung:	n/a	n/a
2	MAX	chr4:15775679-15776199	Hela-S3	cervix:	n/a	n/a
3	SP1	chr4:15775536-15776307	A549	lung:	n/a	n/a
4	NR3C1	chr4:15775714-15776309	A549	lung:	n/a	n/a
5	FOXA2	chr4:15775633-15776300	A549	lung:	n/a	n/a
6	GATA3	chr4:15775581-15776286	A549	lung:	n/a	n/a
7	NR3C1	chr4:15775707-15776360	A549	lung:	n/a	n/a
8	SP1	chr4:15775538-15776372	A549	lung:	n/a	n/a
9	CEBPB	chr4:15775603-15776240	A549	lung:	n/a	n/a
10	FOXA1	chr4:15775754-15776267	A549	lung:	n/a	n/a
11	NR3C1	chr4:15775712-15776327	A549	lung:	n/a	n/a
12	EP300	chr4:15775612-15776327	A549	lung:	n/a	n/a
13	TCF12	chr4:15775553-15776370	A549	lung:	n/a	n/a
14	NR3C1	chr4:15775568-15776344	A549	lung:	n/a	n/a
15	EP300	chr4:15775525-15776300	A549	lung:	n/a	n/a
16	FOSL2	chr4:15775647-15776217	A549	lung:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15771423..15774001-chr4:15776022..15777670,2	K562	blood:

No data

Variant related genes	Relation type
CD38	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15767200-15779400	Weak transcription	Spleen	Spleen
2	chr4:15768200-15777200	Enhancers	Fetal Thymus	thymus
3	chr4:15769200-15778600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:15771200-15779400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:15772400-15776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:15772400-15776600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:15772800-15776200	Enhancers	Duodenum Mucosa	Duodenum
8	chr4:15772800-15778000	Flanking Active TSS	Dnd41	blood
9	chr4:15773600-15779200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:15774000-15779800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:15774400-15779400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:15774400-15779600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:15774400-15780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:15774400-15780000	Weak transcription	Small Intestine	intestine
15	chr4:15774600-15779200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:15774600-15779600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:15774800-15776400	Enhancers	Stomach Mucosa	stomach
18	chr4:15774800-15779000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:15775200-15779200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:15775400-15776200	Enhancers	GM12878-XiMat	blood
21	chr4:15775400-15776400	Enhancers	Hela-S3	cervix
22	chr4:15775400-15776600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:15775400-15776800	Enhancers	Primary T cells from cord blood	blood
24	chr4:15775600-15776200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr4:15775800-15776200	Bivalent Enhancer	HepG2	liver
26	chr4:15775800-15777400	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:15775800-15779000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:15776000-15776200	Flanking Active TSS	A549	lung
29	chr4:15776000-15777400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr4:15776000-15778600	Weak transcription	Thymus	Thymus
31	chr4:15776000-15779600	Weak transcription	Rectal Mucosa Donor 29	rectum

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