Variant report

Variant	rs145175566
Chromosome Location	chr1:91968741-91968742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91869685..91873685-chr1:91965673..91969192,5	K562	blood:
2	chr1:91966732..91969554-chr1:91971493..91974418,3	MCF-7	breast:
3	chr1:91965033..91967029-chr1:91968588..91971259,3	MCF-7	breast:
4	chr1:91879633..91881170-chr1:91966893..91969122,2	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2452061	chr1:91968506-91969970	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967200-91972000	Weak transcription	Spleen	Spleen
2	chr1:91967200-91980800	Weak transcription	Gastric	stomach
3	chr1:91967200-91989000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:91967400-91969000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:91967400-91970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:91967400-91977600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:91967400-91978200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:91967400-91984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:91967400-91989000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:91967600-91968800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:91967600-91968800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:91967600-91968800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:91967600-91968800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr1:91967600-91968800	Flanking Active TSS	NHDF-Ad	bronchial
15	chr1:91967600-91969000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:91967600-91969200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:91967600-91969200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr1:91967600-91970400	Weak transcription	Brain Substantia Nigra	brain
19	chr1:91967600-91971400	Transcr. at gene 5' and 3'	Dnd41	blood
20	chr1:91967600-91971800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:91967600-91980400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:91967600-91990600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:91967800-91968800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:91967800-91976000	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:91967800-91979200	Weak transcription	Primary B cells from cord blood	blood
26	chr1:91967800-91982400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:91967800-91983000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
29	chr1:91968000-91968800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:91968000-91968800	Enhancers	Fetal Lung	lung
31	chr1:91968000-91968800	Enhancers	Osteobl	bone
32	chr1:91968000-91969000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr1:91968000-91969000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:91968000-91969200	Enhancers	Primary hematopoietic stem cells	blood
35	chr1:91968000-91969200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:91968000-91971400	Weak transcription	Placenta	Placenta
37	chr1:91968000-91973800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:91968000-91973800	Weak transcription	Fetal Thymus	thymus
39	chr1:91968000-91974600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:91968000-91982800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:91968000-91983000	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:91968000-91984400	Weak transcription	Fetal Intestine Large	intestine
43	chr1:91968000-91991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:91968200-91968800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:91968200-91969000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:91968200-91969000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
47	chr1:91968200-91970600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:91968200-91973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:91968200-91987400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr1:91968400-91968800	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links