Variant report

Variant	rs1451889
Chromosome Location	chr15:33080544-33080545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10152477	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1258735	0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs12594522	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12594731	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915737	0.83[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs16958655	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16958658	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes]
rs16958734	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs16958882	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958934	1.00[AFR][1000 genomes]
rs1979168	0.82[CHD][hapmap]
rs35996545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55736222	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58590974	0.89[ASN][1000 genomes]
rs59331673	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9806473	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv903977	chr15:33040782-33117302	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33060600-33097600	Weak transcription	Thymus	Thymus
2	chr15:33061200-33141000	Weak transcription	Placenta	Placenta
3	chr15:33062600-33111200	Weak transcription	Gastric	stomach
4	chr15:33063200-33082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:33063800-33094400	Weak transcription	Fetal Stomach	stomach
6	chr15:33065800-33098600	Weak transcription	Colonic Mucosa	Colon
7	chr15:33067200-33089000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:33071400-33081000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:33071400-33082600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:33072600-33090200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:33072800-33087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:33074400-33082200	Weak transcription	NH-A	brain
13	chr15:33074800-33084200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:33075000-33082200	Weak transcription	A549	lung
15	chr15:33075000-33096400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:33077000-33082000	Weak transcription	NHDF-Ad	bronchial
17	chr15:33079200-33080600	Enhancers	HepG2	liver
18	chr15:33079400-33081000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:33079600-33082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:33079800-33080600	Weak transcription	NHLF	lung
21	chr15:33079800-33080800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:33079800-33082000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:33079800-33082400	Weak transcription	HSMMtube	muscle
24	chr15:33079800-33094200	Weak transcription	HSMM	muscle
25	chr15:33080000-33090400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:33080200-33080800	Enhancers	Ovary	ovary
27	chr15:33080200-33080800	Strong transcription	Osteobl	bone
28	chr15:33080200-33081000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:33080400-33080800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:33080400-33080800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:33080400-33081800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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