Variant report

Variant	rs145224236
Chromosome Location	chr19:44531286-44531287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44529555..44531861-chr19:44550598..44553119,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv961226	chr19:44530539-44531310	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44530200-44531400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:44530200-44531600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:44530200-44535400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:44530400-44531400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr19:44530400-44531600	Weak transcription	Small Intestine	intestine
6	chr19:44530400-44531800	Weak transcription	Psoas Muscle	Psoas
7	chr19:44530400-44532200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr19:44530400-44536200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr19:44530600-44531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:44530600-44531400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr19:44530600-44531400	Weak transcription	Brain Angular Gyrus	brain
12	chr19:44530600-44531400	Weak transcription	Fetal Heart	heart
13	chr19:44530600-44531400	Enhancers	Hela-S3	cervix
14	chr19:44530600-44531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr19:44530600-44531600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr19:44530600-44531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:44530600-44531600	Weak transcription	Right Atrium	heart
18	chr19:44530600-44531800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr19:44530600-44531800	Weak transcription	GM12878-XiMat	blood
20	chr19:44530600-44531800	Weak transcription	NHEK	skin
21	chr19:44530600-44532000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:44530600-44532000	Strong transcription	Fetal Intestine Large	intestine
23	chr19:44530600-44532000	Weak transcription	Pancreas	Pancrea
24	chr19:44530600-44532000	Weak transcription	NH-A	brain
25	chr19:44530600-44532200	Weak transcription	NHDF-Ad	bronchial
26	chr19:44530600-44534400	Weak transcription	Stomach Mucosa	stomach
27	chr19:44530600-44534600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr19:44530600-44534800	Weak transcription	HUVEC	blood vessel
29	chr19:44530600-44535000	Weak transcription	HMEC	breast
30	chr19:44530800-44531600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr19:44530800-44532200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr19:44530800-44532200	Strong transcription	Fetal Muscle Leg	muscle
33	chr19:44530800-44533000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
34	chr19:44530800-44534200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:44530800-44534600	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr19:44530800-44534600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr19:44530800-44537000	ZNF genes & repeats	Fetal Kidney	kidney
38	chr19:44530800-44537000	ZNF genes & repeats	Fetal Lung	lung
39	chr19:44530800-44537200	ZNF genes & repeats	Ovary	ovary
40	chr19:44530800-44539200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr19:44530800-44539600	ZNF genes & repeats	Fetal Brain Female	brain
42	chr19:44530800-44542600	ZNF genes & repeats	Liver	Liver
43	chr19:44531000-44531400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:44531000-44531400	Strong transcription	Brain Hippocampus Middle	brain
45	chr19:44531000-44531400	Strong transcription	Fetal Intestine Small	intestine
46	chr19:44531000-44531400	Strong transcription	Pancreatic Islets	Pancreatic Islet
47	chr19:44531000-44531400	Strong transcription	A549	lung
48	chr19:44531000-44531600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
49	chr19:44531000-44531600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr19:44531000-44531600	Strong transcription	Gastric	stomach

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