Variant report

Variant	rs145259240
Chromosome Location	chr1:150026554-150026555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149853918..149856291-chr1:150026219..150029011,2	K562	blood:
2	chr1:150025906..150027967-chr1:150037390..150039741,3	MCF-7	breast:
3	chr1:149858594..149860168-chr1:150024352..150026596,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv946383	chr1:150025994-150026975	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
5	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:150022800-150032400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:150023000-150028600	Weak transcription	Primary B cells from cord blood	blood
10	chr1:150023000-150033600	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:150025200-150027200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:150025400-150026600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:150025800-150027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:150026000-150026600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr1:150026200-150026600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:150026200-150026600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:150026200-150026600	Enhancers	Spleen	Spleen
18	chr1:150026200-150026600	Enhancers	GM12878-XiMat	blood
19	chr1:150026400-150026600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:150026400-150027000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:150026400-150033600	Weak transcription	NHDF-Ad	bronchial
22	chr1:150026400-150033800	Weak transcription	Right Atrium	heart

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