Variant report

Variant	rs145279791
Chromosome Location	chr20:23615396-23615397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23614494-23618787	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:23611829-23619325	HepG2	liver:	n/a	n/a
3	POLR2A	chr20:23615259-23617766	HepG2	liver:	n/a	n/a
4	HEY1	chr20:23615393-23617806	HepG2	liver:	n/a	n/a
5	POLR2A	chr20:23614496-23617566	HepG2	liver:	n/a	n/a
6	POLR2A	chr20:23611753-23618814	HepG2	liver:	n/a	n/a
7	POLR2A	chr20:23615326-23618779	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr20:23615314-23615408	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr20:23615279-23615492	K562	blood:	n/a	n/a
10	POLR2A	chr20:23615277-23616335	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23610507..23612555-chr20:23613561..23616038,2	MCF-7	breast:
2	chr20:23604645..23607070-chr20:23613987..23616956,2	K562	blood:
3	chr20:23608610..23615599-chr20:23616056..23619619,19	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270001	TF binding region
ENSG00000101439	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv964381	chr20:23614805-23621846	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23600600-23617000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:23602000-23616800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr20:23603800-23615400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:23604000-23616600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr20:23604000-23616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:23606600-23617000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:23606800-23616600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:23607600-23615400	Weak transcription	Fetal Kidney	kidney
9	chr20:23609800-23616800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:23610200-23616800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr20:23610200-23617000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr20:23610200-23617000	Weak transcription	K562	blood
13	chr20:23610400-23615400	Weak transcription	NHDF-Ad	bronchial
14	chr20:23610400-23616000	Weak transcription	Fetal Thymus	thymus
15	chr20:23610400-23616800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr20:23610400-23616800	Weak transcription	NH-A	brain
17	chr20:23610400-23618200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr20:23610600-23616800	Weak transcription	Hela-S3	cervix
19	chr20:23610800-23616800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr20:23610800-23617400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr20:23611000-23615600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr20:23611000-23616000	Strong transcription	Fetal Intestine Small	intestine
23	chr20:23611200-23615800	Weak transcription	GM12878-XiMat	blood
24	chr20:23611400-23615600	Weak transcription	HUVEC	blood vessel
25	chr20:23612000-23615400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr20:23612000-23615600	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr20:23612000-23615600	Strong transcription	Fetal Intestine Large	intestine
28	chr20:23612000-23617000	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr20:23612200-23615400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr20:23612200-23615400	Strong transcription	NHLF	lung
31	chr20:23612200-23615800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr20:23612200-23615800	Strong transcription	Aorta	Aorta
33	chr20:23612200-23616200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr20:23612400-23615800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr20:23612400-23616000	Strong transcription	Fetal Stomach	stomach
36	chr20:23612600-23615400	Genic enhancers	Adipose Nuclei	Adipose
37	chr20:23612600-23615400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr20:23612600-23616000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr20:23612600-23616600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr20:23612600-23616600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr20:23612600-23617200	Genic enhancers	Fetal Muscle Leg	muscle
42	chr20:23612800-23615400	Strong transcription	Fetal Brain Female	brain
43	chr20:23612800-23615400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr20:23612800-23615400	Strong transcription	NHEK	skin
45	chr20:23612800-23615600	Weak transcription	Fetal Lung	lung
46	chr20:23612800-23616200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr20:23612800-23617200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr20:23613000-23615400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr20:23613000-23616800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr20:23613200-23615400	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links