Variant report

Variant	rs1452885
Chromosome Location	chr12:44944850-44944851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11612950	0.82[MEX][hapmap]
rs12578826	0.97[ASN][1000 genomes]
rs12581800	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12582341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12582547	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1466197	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094758	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17094881	0.82[MEX][hapmap]
rs17094886	0.82[MEX][hapmap]
rs17572590	0.82[MEX][hapmap]
rs17650849	0.82[MEX][hapmap]
rs17652715	0.82[MEX][hapmap]
rs4768061	0.88[AMR][1000 genomes]
rs7305652	0.82[MEX][hapmap]
rs7968983	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976217	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44937600-44947600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:44942000-44949000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:44944000-44948400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:44944800-44947800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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