Variant report

Variant	rs145384565
Chromosome Location	chr6:131456037-131456038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:131456011-131456610	A549	lung:	n/a	chr6:131456292-131456305 chr6:131456294-131456305 chr6:131456292-131456303 chr6:131456294-131456305
2	MAX	chr6:131456030-131457706	HepG2	liver:	n/a	chr6:131456304-131456314 chr6:131456533-131456543 chr6:131456434-131456444 chr6:131456378-131456388
3	POLR2A	chr6:131455747-131457842	MCF10A-Er-Src	breast:	n/a	n/a
4	MAX	chr6:131456029-131457229	HCT-116	colon:	n/a	chr6:131456304-131456314 chr6:131456533-131456543 chr6:131456434-131456444 chr6:131456378-131456388
5	POLR2A	chr6:131455744-131457623	HepG2	liver:	n/a	n/a
6	MYC	chr6:131456009-131457421	MCF10A-Er-Src	breast:	n/a	chr6:131456304-131456314 chr6:131456533-131456543 chr6:131456434-131456444 chr6:131456378-131456388
7	TEAD4	chr6:131455929-131456689	HepG2	liver:	n/a	n/a
8	GATA3	chr6:131455940-131456125	SH-SY5Y	brain:	n/a	n/a
9	BRCA1	chr6:131455939-131456362	Hela-S3	cervix:	n/a	n/a
10	MYC	chr6:131455884-131456573	MCF10A-Er-Src	breast:	n/a	chr6:131456304-131456314 chr6:131456533-131456543 chr6:131456434-131456444 chr6:131456378-131456388
11	JUND	chr6:131456034-131456714	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chr6:131456020-131457378	A549	lung:	n/a	chr6:131456304-131456314 chr6:131456533-131456543 chr6:131456434-131456444 chr6:131456378-131456388
13	POLR2A	chr6:131455500-131457509	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131455039..131456597-chr6:131460458..131462514,2	K562	blood:
2	chr6:131452705..131454330-chr6:131455080..131456599,2	K562	blood:

Variant related genes	Relation type
AKAP7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv3398888	chr6:131455859-131457857	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131446000-131456200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:131455000-131456200	Enhancers	Small Intestine	intestine
3	chr6:131455400-131456200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:131455400-131456200	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr6:131455600-131456200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:131455600-131456400	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr6:131455600-131456400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:131455600-131458000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:131455600-131458200	Active TSS	Stomach Smooth Muscle	stomach
10	chr6:131455800-131456200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:131455800-131456200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:131455800-131456200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:131455800-131456200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:131455800-131456200	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:131455800-131456200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:131455800-131456200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:131455800-131456200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:131455800-131456200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:131455800-131456200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:131455800-131456200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:131455800-131456200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:131455800-131456200	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr6:131455800-131456200	Enhancers	Aorta	Aorta
24	chr6:131455800-131456200	Enhancers	Placenta	Placenta
25	chr6:131455800-131456200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:131455800-131456200	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr6:131455800-131456200	Enhancers	Right Ventricle	heart
28	chr6:131455800-131456200	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr6:131455800-131456200	Flanking Active TSS	A549	lung
30	chr6:131455800-131456200	Flanking Active TSS	Dnd41	blood
31	chr6:131455800-131456200	Enhancers	HSMMtube	muscle
32	chr6:131455800-131456200	Flanking Active TSS	NHLF	lung
33	chr6:131455800-131456400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:131455800-131456400	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr6:131455800-131456400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr6:131455800-131456400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr6:131455800-131456400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:131455800-131456400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:131455800-131456400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:131455800-131456400	Flanking Active TSS	Liver	Liver
41	chr6:131455800-131456400	Flanking Active TSS	HMEC	breast
42	chr6:131455800-131456600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr6:131455800-131456600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr6:131455800-131457200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:131455800-131457400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:131455800-131457400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:131455800-131457600	Active TSS	H9 Cell Line	embryonic stem cell
48	chr6:131455800-131457600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:131455800-131457600	Active TSS	Brain Angular Gyrus	brain
50	chr6:131455800-131457600	Active TSS	NH-A	brain

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